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Aliases for HAGLR Gene

Subcategory (RNA class) for HAGLR Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for HAGLR Gene

  • HOXD Antisense Growth-Associated Long Non-Coding RNA 2 3 5
  • HOXD Cluster Antisense RNA 1 (Non-Protein Coding) 2 3
  • HOXD Cluster Antisense RNA 1 2
  • MIR7704 Host Gene 2
  • MIR7704 Host 3
  • MIR7704HG 3
  • HOXD-AS1 3
  • Mdgt 3

External Ids for HAGLR Gene

Previous HGNC Symbols for HAGLR Gene

  • HOXD-AS1

Summaries for HAGLR Gene

GeneCards Summary for HAGLR Gene

HAGLR (HOXD Antisense Growth-Associated Long Non-Coding RNA) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with HAGLR include Ovarian Epithelial Cancer and Neuroblastoma 1.

Additional gene information for HAGLR Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HAGLR Gene

Genomics for HAGLR Gene

GeneHancer (GH) Regulatory Elements for HAGLR Gene

Promoters and enhancers for HAGLR Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J176186 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 600.7 +0.2 222 3.7 ZNF652 ELF3 MNT POLR2A CEBPG SP7 HNF1A PPARG PRDM1 ZNF644 HOXD1 HAGLR MIR7704 ENSG00000279160
GH02J176127 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 20.7 +54.7 54677 14.3 SP1 ZFX CC2D1A ELF3 CTCF NKRF ZNF121 CEBPG GTF2F1 ZNF384 HOXD4 HOXD8 HOXD3 HOXD1 HAGLR HOXD9 HAGLROS HOXD11 ATF2 HOXD-AS2
GH02J176159 Promoter/Enhancer 1 Ensembl ENCODE 27.3 +27.7 27745 3 ELF3 AHR EZH2 USF1 GABPB1 PRDM4 USF2 HAGLROS HAGLR HOXD1 HOXD-AS2 HOXD9 HOXD3 HOXD8 HOXD10 HOXD11 HOXD13
GH02J176177 Promoter/Enhancer 1.2 Ensembl ENCODE 15.1 +10.9 10879 1.5 GLIS2 ZBTB8A CTBP1 NRF1 KLF9 EZH2 ZBTB26 USF1 ZBTB17 ZFHX2 HAGLROS HAGLR HOXD1 HOXD4 HOXD3 HOXD-AS2 MIR10B HOXD11 HOXD12 HOXD10
GH02J176121 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 8.8 +65.7 65691 2.7 POLR2A PKNOX1 ZBTB44 EZH2 USF1 ZNF580 USF2 ZNF202 MAX FEZF1 HOXD9 HAGLR HOXD8 LOC100129455 GC02M176128 HOXD-AS2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around HAGLR on UCSC Golden Path with GeneCards custom track

Genomic Locations for HAGLR Gene

Genomic Locations for HAGLR Gene
chr2:176,164,051-176,188,958
(GRCh38/hg38)
Size:
24,908 bases
Orientation:
Minus strand
chr2:177,037,923-177,053,686
(GRCh37/hg19)
Size:
15,764 bases
Orientation:
Minus strand

Genomic View for HAGLR Gene

Genes around HAGLR on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HAGLR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HAGLR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HAGLR Gene

Proteins for HAGLR Gene

No data available for DME Specific Peptides for HAGLR Gene

Domains & Families for HAGLR Gene

Gene Families for HAGLR Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HAGLR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HAGLR Gene

Function for HAGLR Gene

Phenotypes From GWAS Catalog for HAGLR Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HAGLR Gene

Localization for HAGLR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HAGLR Gene

Pathways & Interactions for HAGLR Gene

PathCards logo

SuperPathways for HAGLR Gene

No Data Available

Interacting Proteins for HAGLR Gene

Gene Ontology (GO) - Biological Process for HAGLR Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HAGLR Gene

Drugs & Compounds for HAGLR Gene

No Compound Related Data Available

Transcripts for HAGLR Gene

mRNA/cDNA for HAGLR Gene

(15) Additional mRNA sequences :
(16) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(27) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for HAGLR Gene

No ASD Table

Relevant External Links for HAGLR Gene

GeneLoc Exon Structure for
HAGLR
ECgene alternative splicing isoforms for
HAGLR

Expression for HAGLR Gene

NURSA nuclear receptor signaling pathways regulating expression of HAGLR Gene:

HAGLR
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HAGLR Gene

Orthologs for HAGLR Gene

Evolution for HAGLR Gene

ENSEMBL:
Gene Tree for HAGLR (if available)
TreeFam:
Gene Tree for HAGLR (if available)

No data available for Orthologs for HAGLR Gene

Paralogs for HAGLR Gene

No data available for Paralogs for HAGLR Gene

Variants for HAGLR Gene

Sequence variations from dbSNP and Humsavar for HAGLR Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000498648 -- 176,183,382(-) G/A genic_upstream_transcript_variant, intron_variant
rs1000552241 -- 176,182,995(-) G/A genic_upstream_transcript_variant, intron_variant
rs1000929407 -- 176,176,214(-) G/A non_coding_transcript_variant
rs1000981774 -- 176,176,419(-) T/C non_coding_transcript_variant
rs1001145882 -- 176,177,161(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for HAGLR Gene

Variant ID Type Subtype PubMed ID
dgv676n67 CNV gain 20364138
nsv1001933 CNV gain 25217958

Additional Variant Information for HAGLR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HAGLR

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HAGLR Gene

Disorders for HAGLR Gene

MalaCards: The human disease database

(10) MalaCards diseases for HAGLR Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
ovarian epithelial cancer
  • eoc
neuroblastoma 1
  • neuroblastoma, susceptibility to, 1
bladder cancer
  • bladder cancer, somatic
cervical cancer
  • cervical cancer, somatic
thyroid cancer, nonmedullary, 1
  • nmtc1
- elite association - COSMIC cancer census association via MalaCards
Search HAGLR in MalaCards View complete list of genes associated with diseases

Additional Disease Information for HAGLR

genes like me logo Genes that share disorders with HAGLR: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HAGLR Gene

Publications for HAGLR Gene

  1. Small RNA sequences derived from pre-microRNAs in the supraspliceosome. (PMID: 30203035) Mahlab-Aviv S … Linial M (Nucleic acids research 2018) 2 3 58
  2. Multiple knockout mouse models reveal lincRNAs are required for life and brain development. (PMID: 24381249) Sauvageau M … Rinn JL (eLife 2013) 2 3 58
  3. Role of genomic architecture in the expression dynamics of long noncoding RNAs during differentiation of human neuroblastoma cells. (PMID: 24555823) Batagov AO … Kurochkin IV (BMC systems biology 2013) 2 3 58
  4. HOXD-AS1/miR-130a sponge regulates glioma development by targeting E2F8. (PMID: 29341117) Chen Y … Shi J (International journal of cancer 2018) 3 58
  5. Knockdown of long non-coding RNA HOXD-AS1 inhibits the progression of osteosarcoma. (PMID: 29571260) Qu Y … Zhao J (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2018) 3 58

Products for HAGLR Gene

Sources for HAGLR Gene

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