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Aliases for H3F3AP6 Gene

Aliases for H3F3AP6 Gene

  • H3 Histone, Family 3A, Pseudogene 6 2 3 5
  • H3 Histone, Family 3A Pseudogene 3
  • H3 Histone Pseudogene 3
  • Histone H3 13
  • P21 3

External Ids for H3F3AP6 Gene

Previous GeneCards Identifiers for H3F3AP6 Gene

  • GC04M140620

Summaries for H3F3AP6 Gene

GeneCards Summary for H3F3AP6 Gene

H3F3AP6 (H3 Histone, Family 3A, Pseudogene 6) is a Pseudogene.

Additional gene information for H3F3AP6 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for H3F3AP6 Gene

Genomics for H3F3AP6 Gene

GeneHancer (GH) Regulatory Elements for H3F3AP6 Gene

Promoters and enhancers for H3F3AP6 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J139698 Promoter 0.7 Ensembl 600.7 +0.1 135 0.6 PRDM1 CTCF ZBTB33 H3F3AP6 RN7SKP237 GC04M139686 MGST2
GH04J139081 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE 5.9 +614.9 614888 4.4 SP1 ZFX ELF3 CC2D1A MNT ZNF148 NKRF POLR2A MLLT1 ZNF121 ELF2 NAA15 NOCT ENSG00000273247 ENSG00000250195 MGARP RAB33B H3F3AP6 GC04P139099 RNU6-531P
GH04J139451 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 4.5 +244.1 244051 5.6 HDGF CC2D1A ZFX ELF3 MNT NKRF MLLT1 ZNF121 CEBPG POLR2A RAB33B LOC101927451 ENSG00000273247 NDUFC1 MAML3 ELF2 MGARP H3F3AP6 GC04P139503
GH04J139313 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 4.5 +383.4 383443 4.1 CC2D1A MLLT1 ZNF687 CREM IKZF1 PKNOX1 LEF1 HDAC1 IKZF2 ZNF316 NDUFC1 MGARP RAB33B H3F3AP6 ELF2 GC04P139319 NAA15
GH04J139323 Enhancer 0.7 Ensembl 4.5 +376.2 376234 6.8 CC2D1A ZNF121 TRIM24 MZF1 ZNF512 ZNF766 NCOR1 KDM4B NFIC PRDM4 RAB33B NDUFC1 MGARP NAA15 MAML3 NOCT H3F3AP6 RNU6-1214P GC04P139370
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around H3F3AP6 on UCSC Golden Path with GeneCards custom track

Genomic Locations for H3F3AP6 Gene

Genomic Locations for H3F3AP6 Gene
chr4:139,697,626-139,698,635
(GRCh38/hg38)
Size:
1,010 bases
Orientation:
Minus strand
chr4:140,618,780-140,619,789
(GRCh37/hg19)
Size:
1,010 bases
Orientation:
Minus strand

Genomic View for H3F3AP6 Gene

Genes around H3F3AP6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
H3F3AP6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for H3F3AP6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for H3F3AP6 Gene

Proteins for H3F3AP6 Gene

  • Protein details for H3F3AP6 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1X8XL64-A0A1X8XL64_HUMAN
    Recommended name:
    Histone H3
    Protein Accession:
    A0A1X8XL64

    Protein attributes for H3F3AP6 Gene

    Size:
    139 amino acids
    Molecular mass:
    15507 Da
    Quaternary structure:
    • The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.

    Three dimensional structures from OCA and Proteopedia for H3F3AP6 Gene

neXtProt entry for H3F3AP6 Gene

Post-translational modifications for H3F3AP6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for H3F3AP6 Gene

Domains & Families for H3F3AP6 Gene

Gene Families for H3F3AP6 Gene

Unknown:
  • Belongs to the histone H3 family.

Protein Domains for H3F3AP6 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with H3F3AP6: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for H3F3AP6 Gene

Function for H3F3AP6 Gene

Animal Model Products

CRISPR Products

miRNA for H3F3AP6 Gene

miRTarBase miRNAs that target H3F3AP6

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for H3F3AP6 Gene

Localization for H3F3AP6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for H3F3AP6 Gene

Pathways & Interactions for H3F3AP6 Gene

PathCards logo

SuperPathways for H3F3AP6 Gene

No Data Available

Interacting Proteins for H3F3AP6 Gene

Gene Ontology (GO) - Biological Process for H3F3AP6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for H3F3AP6 Gene

Drugs & Compounds for H3F3AP6 Gene

No Compound Related Data Available

Transcripts for H3F3AP6 Gene

mRNA/cDNA for H3F3AP6 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for H3F3AP6 Gene

No ASD Table

Relevant External Links for H3F3AP6 Gene

GeneLoc Exon Structure for
H3F3AP6
ECgene alternative splicing isoforms for
H3F3AP6

Expression for H3F3AP6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for H3F3AP6 Gene

mRNA differential expression in normal tissues according to GTEx for H3F3AP6 Gene

This gene is overexpressed in Whole Blood (x15.5).

NURSA nuclear receptor signaling pathways regulating expression of H3F3AP6 Gene:

H3F3AP6
genes like me logo Genes that share expression patterns with H3F3AP6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for H3F3AP6 Gene

Orthologs for H3F3AP6 Gene

Evolution for H3F3AP6 Gene

ENSEMBL:
Gene Tree for H3F3AP6 (if available)
TreeFam:
Gene Tree for H3F3AP6 (if available)

No data available for Orthologs for H3F3AP6 Gene

Paralogs for H3F3AP6 Gene

No data available for Paralogs for H3F3AP6 Gene

Variants for H3F3AP6 Gene

Additional Variant Information for H3F3AP6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
H3F3AP6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for H3F3AP6 Gene

Disorders for H3F3AP6 Gene

No disorders were found for H3F3AP6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for H3F3AP6 Gene

Publications for H3F3AP6 Gene

  1. The human histone H3 complement anno 2011. (PMID: 21782046) Ederveen TH … Logie C (Biochimica et biophysica acta 2011) 2 3 58
  2. Crystal Structure and Characterization of Novel Human Histone H3 Variants, H3.6, H3.7, and H3.8. (PMID: 28374988) Taguchi H … Kurumizaka H (Biochemistry 2017) 13 58
  3. Proteomic analysis of α4β1 integrin adhesion complexes reveals α-subunit-dependent protein recruitment. (PMID: 22623428) Byron A … Humphries MJ (Proteomics 2012) 3 58
  4. Poly(ADP-ribosyl)ation directs recruitment and activation of an ATP-dependent chromatin remodeler. (PMID: 19666485) Gottschalk AJ … Conaway RC (Proceedings of the National Academy of Sciences of the United States of America 2009) 3 58

Products for H3F3AP6 Gene

Sources for H3F3AP6 Gene

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