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Aliases for H3F3AP4 Gene

Aliases for H3F3AP4 Gene

  • H3 Histone, Family 3A, Pseudogene 4 2 3 5
  • H3 Histone, Family 3A Pseudogene 3
  • P13 3

External Ids for H3F3AP4 Gene

Previous GeneCards Identifiers for H3F3AP4 Gene

  • GC02P175586

Summaries for H3F3AP4 Gene

GeneCards Summary for H3F3AP4 Gene

H3F3AP4 (H3 Histone, Family 3A, Pseudogene 4) is a Pseudogene.

Additional gene information for H3F3AP4 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for H3F3AP4 Gene

Genomics for H3F3AP4 Gene

GeneHancer (GH) Regulatory Elements for H3F3AP4 Gene

Promoters and enhancers for H3F3AP4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J174719 Promoter 0.6 Ensembl 600.7 +0.2 201 0.8 ZBTB33 H3F3AP4 WIPF1 LOC105373750 GC02P174645 ENSG00000236449
GH02J174760 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 0.3 +43.8 43812 5.9 CEBPG MLLT1 IKZF1 IKZF2 CEBPA ZBTB44 DPF2 OSR2 RUNX3 USF1 CHRNA1 CHN1 ENSG00000236449 LOC105373750 H3F3AP4 GC02P174645
GH02J174748 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.3 +31.6 31587 5.2 SP1 CTCF RELA CREM RAD21 IKZF1 CREB1 IKZF2 ZNF143 ZEB2 CHN1 WIPF1 CHRNA1 LOC105373750 H3F3AP4 GC02P174645 ENSG00000236449
GH02J174775 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +58.9 58946 6.5 SP1 CTCF CEBPG ZNF687 TFE3 CREM IKZF1 ZBTB33 POLR2A IKZF2 CHN1 ATP5MC3 CIR1 LOC105373750 CHRNA1 H3F3AP4 GC02P174645
GH02J174721 Enhancer 0.4 Ensembl 0.7 +2.6 2600 2.8 FOXA2 MEF2D CEBPB WIPF1 H3F3AP4 LOC105373750 GC02P174645 ENSG00000236449
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around H3F3AP4 on UCSC Golden Path with GeneCards custom track

Genomic Locations for H3F3AP4 Gene

Genomic Locations for H3F3AP4 Gene
chr2:174,719,800-174,720,858
(GRCh38/hg38)
Size:
1,059 bases
Orientation:
Plus strand
chr2:175,584,505-175,585,586
(GRCh37/hg19)
Size:
1,082 bases
Orientation:
Plus strand

Genomic View for H3F3AP4 Gene

Genes around H3F3AP4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
H3F3AP4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for H3F3AP4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for H3F3AP4 Gene

Proteins for H3F3AP4 Gene

Post-translational modifications for H3F3AP4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for H3F3AP4 Gene

Domains & Families for H3F3AP4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for H3F3AP4 Gene

Function for H3F3AP4 Gene

Phenotypes From GWAS Catalog for H3F3AP4 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for H3F3AP4 Gene

Localization for H3F3AP4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for H3F3AP4 Gene

Pathways & Interactions for H3F3AP4 Gene

PathCards logo

SuperPathways for H3F3AP4 Gene

No Data Available

Interacting Proteins for H3F3AP4 Gene

Gene Ontology (GO) - Biological Process for H3F3AP4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for H3F3AP4 Gene

Drugs & Compounds for H3F3AP4 Gene

No Compound Related Data Available

Transcripts for H3F3AP4 Gene

mRNA/cDNA for H3F3AP4 Gene

(4) Additional mRNA sequences :
(1153) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for H3F3AP4 Gene

No ASD Table

Relevant External Links for H3F3AP4 Gene

GeneLoc Exon Structure for
H3F3AP4
ECgene alternative splicing isoforms for
H3F3AP4

Expression for H3F3AP4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for H3F3AP4 Gene

mRNA differential expression in normal tissues according to GTEx for H3F3AP4 Gene

This gene is overexpressed in Whole Blood (x13.8).

NURSA nuclear receptor signaling pathways regulating expression of H3F3AP4 Gene:

H3F3AP4
genes like me logo Genes that share expression patterns with H3F3AP4: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for H3F3AP4 Gene

Orthologs for H3F3AP4 Gene

Evolution for H3F3AP4 Gene

ENSEMBL:
Gene Tree for H3F3AP4 (if available)
TreeFam:
Gene Tree for H3F3AP4 (if available)

No data available for Orthologs for H3F3AP4 Gene

Paralogs for H3F3AP4 Gene

No data available for Paralogs for H3F3AP4 Gene

Variants for H3F3AP4 Gene

Sequence variations from dbSNP and Humsavar for H3F3AP4 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000063278 -- 174,719,812(+) C/T non_coding_transcript_variant
rs1004095735 -- 174,720,657(+) A/T non_coding_transcript_variant
rs1004438658 -- 174,721,248(+) A/C downstream_transcript_variant
rs1004776704 -- 174,718,580(+) C/A upstream_transcript_variant
rs1004807907 -- 174,718,235(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for H3F3AP4 Gene

Variant ID Type Subtype PubMed ID
esv3575313 CNV gain 25503493
esv3589008 CNV gain 21293372
nsv1012645 CNV loss 25217958
nsv459948 CNV loss 19166990
nsv470500 CNV loss 18288195
nsv583668 CNV loss 21841781
nsv832747 CNV gain 17160897
nsv945330 CNV duplication 23825009
nsv952128 CNV duplication 24416366
nsv961910 CNV duplication 23825009

Additional Variant Information for H3F3AP4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
H3F3AP4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for H3F3AP4 Gene

Disorders for H3F3AP4 Gene

Additional Disease Information for H3F3AP4

No disorders were found for H3F3AP4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for H3F3AP4 Gene

Publications for H3F3AP4 Gene

  1. The human histone H3 complement anno 2011. (PMID: 21782046) Ederveen TH … Logie C (Biochimica et biophysica acta 2011) 2 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  3. Unusual structure, evolutionary conservation of non-coding sequences and numerous pseudogenes characterize the human H3.3 histone multigene family. (PMID: 3031613) Wells D … Kedes L (Nucleic acids research 1987) 3 58

Products for H3F3AP4 Gene

Sources for H3F3AP4 Gene

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