Histones are basic nuclear proteins responsible for nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in ... See more...

Aliases for H3C9P Gene

Aliases for H3C9P Gene

  • H3 Clustered Histone 9, Pseudogene 2 3
  • Histone Cluster 1 H3 Pseudogene 1 2 3 5
  • Histone 1, H3, Pseudogene 1 2 3
  • HIST1H3PS1 3 5
  • Histone Cluster 1, H3, Pseudogene 1 2
  • DJ45P21.6 3
  • H3F3AP1 3
  • P36 3

External Ids for H3C9P Gene

Previous HGNC Symbols for H3C9P Gene

  • HIST1H3PS1

Summaries for H3C9P Gene

Entrez Gene Summary for H3C9P Gene

  • Histones are basic nuclear proteins responsible for nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene is a histone pseudogene found on chromosome 6. [provided by RefSeq, Oct 2015]

GeneCards Summary for H3C9P Gene

H3C9P (H3 Clustered Histone 9, Pseudogene) is a Pseudogene.

Additional gene information for H3C9P Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for H3C9P Gene

Genomics for H3C9P Gene

GeneHancer (GH) Regulatory Elements for H3C9P Gene

Promoters and enhancers for H3C9P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J026321 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 0.0 -46 2.7 GTF3C2 ZNF785 ZNF24 ZBTB40 CTCF ZBTB6 LCORL MLX SMARCE1 POLR2A H3C9P TRR-TCG2-1 lnc-HIST1H4H-2 piR-57393-006 ABT1 ZNF322 BTN2A3P HMGN4 BTN3A2 BTN2A1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around H3C9P on UCSC Golden Path with GeneCards custom track

Genomic Locations for H3C9P Gene

Genomic Locations for H3C9P Gene
chr6:26,321,876-26,322,292
(GRCh38/hg38)
Size:
417 bases
Orientation:
Minus strand
chr6:26,322,104-26,343,616
(GRCh37/hg19)
Size:
21,513 bases
Orientation:
Minus strand

Genomic View for H3C9P Gene

Genes around H3C9P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
H3C9P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for H3C9P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for H3C9P Gene

Proteins for H3C9P Gene

No data available for DME Specific Peptides for H3C9P Gene

Domains & Families for H3C9P Gene

Gene Families for H3C9P Gene

HGNC:
genes like me logo Genes that share domains with H3C9P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for H3C9P Gene

Function for H3C9P Gene

Phenotypes From GWAS Catalog for H3C9P Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for H3C9P Gene

Localization for H3C9P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for H3C9P Gene

Pathways & Interactions for H3C9P Gene

PathCards logo

SuperPathways for H3C9P Gene

No Data Available

Gene Ontology (GO) - Biological Process for H3C9P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for H3C9P Gene

Drugs & Compounds for H3C9P Gene

No Compound Related Data Available

Transcripts for H3C9P Gene

mRNA/cDNA for H3C9P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for H3C9P Gene

No ASD Table

Relevant External Links for H3C9P Gene

GeneLoc Exon Structure for
H3C9P
ECgene alternative splicing isoforms for
H3C9P

Expression for H3C9P Gene

NURSA nuclear receptor signaling pathways regulating expression of H3C9P Gene:

H3C9P
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for H3C9P Gene

Orthologs for H3C9P Gene

Evolution for H3C9P Gene

ENSEMBL:
Gene Tree for H3C9P (if available)
TreeFam:
Gene Tree for H3C9P (if available)

No data available for Orthologs for H3C9P Gene

Paralogs for H3C9P Gene

No data available for Paralogs for H3C9P Gene

Variants for H3C9P Gene

Additional Variant Information for H3C9P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
H3C9P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for H3C9P Gene

Disorders for H3C9P Gene

No disorders were found for H3C9P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for H3C9P Gene

Publications for H3C9P Gene

  1. The human histone H3 complement anno 2011. (PMID: 21782046) Ederveen TH … Logie C (Biochimica et biophysica acta 2011) 2 3 56

Products for H3C9P Gene

Sources for H3C9P Gene