Histones are basic nuclear proteins responsible for nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in ... See more...

Aliases for H2BC16P Gene

Aliases for H2BC16P Gene

  • H2B Clustered Histone 16, Pseudogene 2 3 5
  • H2B Histone Family, Member I, Pseudogene 2 3
  • Histone Cluster 1, H2b, Pseudogene 2 2 3
  • Histone Cluster 1 H2B Pseudogene 2 2 3
  • Histone 1, H2b, Pseudogene 2 2 3
  • PH2B/I 2 3
  • HIST1H2BPS2 3
  • H2BC16P 5
  • H2BFIP 3
  • PH2B.I 3

External Ids for H2BC16P Gene

Previous HGNC Symbols for H2BC16P Gene

  • H2BFIP
  • HIST1H2BPS2

Previous GeneCards Identifiers for H2BC16P Gene

  • GC06M028222
  • GC06M028275

Summaries for H2BC16P Gene

Entrez Gene Summary for H2BC16P Gene

  • Histones are basic nuclear proteins responsible for nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This histone pseudogene is found in the small histone gene cluster on chromosome 6. [provided by RefSeq, Oct 2015]

GeneCards Summary for H2BC16P Gene

H2BC16P (H2B Clustered Histone 16, Pseudogene) is a Pseudogene.

Additional gene information for H2BC16P Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for H2BC16P Gene

Genomics for H2BC16P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for H2BC16P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J027862 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -4.3 -4267 12.7 SP1 HNRNPL CREB1 GATAD2A ATF7 PRDM10 REST ZNF629 IKZF1 POLR2A H1-5 MN298282 piR-37468 piR-57285-002 piR-45037 ZKSCAN3 ZKSCAN8 ZKSCAN4 ZSCAN9 ZNF603P
GH06J027854 Enhancer 0.3 Ensembl 0.4 +9.7 9700 1 SPI1 lnc-HIST1H2AL-1 H2BC16P H2AC16 H2AC15 H2BC15
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around H2BC16P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for H2BC16P Gene

Genomic Locations for H2BC16P Gene
chr6:27,864,062-27,864,401
(GRCh38/hg38)
Size:
340 bases
Orientation:
Minus strand
chr6:27,831,840-27,832,179
(GRCh37/hg19)
Size:
340 bases
Orientation:
Minus strand

Genomic View for H2BC16P Gene

Genes around H2BC16P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
H2BC16P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for H2BC16P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for H2BC16P Gene

Proteins for H2BC16P Gene

Post-translational modifications for H2BC16P Gene

No Post-translational modifications

No data available for DME Specific Peptides for H2BC16P Gene

Domains & Families for H2BC16P Gene

Gene Families for H2BC16P Gene

HGNC:
genes like me logo Genes that share domains with H2BC16P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for H2BC16P Gene

Function for H2BC16P Gene

Phenotypes From GWAS Catalog for H2BC16P Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for H2BC16P Gene

Localization for H2BC16P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for H2BC16P Gene

Pathways & Interactions for H2BC16P Gene

PathCards logo

SuperPathways for H2BC16P Gene

No Data Available

Gene Ontology (GO) - Biological Process for H2BC16P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for H2BC16P Gene

Drugs & Compounds for H2BC16P Gene

No Compound Related Data Available

Transcripts for H2BC16P Gene

mRNA/cDNA for H2BC16P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for H2BC16P Gene

No ASD Table

Relevant External Links for H2BC16P Gene

GeneLoc Exon Structure for
H2BC16P

Expression for H2BC16P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for H2BC16P Gene

Orthologs for H2BC16P Gene

Evolution for H2BC16P Gene

ENSEMBL:
Gene Tree for H2BC16P (if available)
TreeFam:
Gene Tree for H2BC16P (if available)

No data available for Orthologs for H2BC16P Gene

Paralogs for H2BC16P Gene

No data available for Paralogs for H2BC16P Gene

Variants for H2BC16P Gene

Additional Variant Information for H2BC16P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
H2BC16P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for H2BC16P Gene

Disorders for H2BC16P Gene

No disorders were found for H2BC16P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for H2BC16P Gene

Publications for H2BC16P Gene

  1. Characterization of the H1.5 gene completes the set of human H1 subtype genes. (PMID: 9031620) Albig W … Doenecke D (Gene 1997) 2 3

Products for H2BC16P Gene

Sources for H2BC16P Gene