Histones are basic nuclear proteins responsible for nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in ... See more...

Aliases for H2AC5P Gene

Aliases for H2AC5P Gene

  • H2A Clustered Histone 5, Pseudogene 2 3
  • H2A Histone Family, Member F, Pseudogene 2 3
  • Histone Cluster 1, H2a, Pseudogene 5 2 3
  • Histone Cluster 1 H2A Pseudogene 5 2 3
  • Histone 1, H2a, Pseudogene 5 2 3
  • HIST1H2APS5 3
  • PH2A/F 3
  • H2AFFP 3

External Ids for H2AC5P Gene

Previous HGNC Symbols for H2AC5P Gene

  • H2AFFP
  • HIST1H2APS5

Summaries for H2AC5P Gene

Entrez Gene Summary for H2AC5P Gene

  • Histones are basic nuclear proteins responsible for nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This histone pseudogene is found in the large histone gene cluster on chromosome 6. [provided by RefSeq, Oct 2015]

GeneCards Summary for H2AC5P Gene

H2AC5P (H2A Clustered Histone 5, Pseudogene) is a Pseudogene.

Additional gene information for H2AC5P Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for H2AC5P Gene

Genomics for H2AC5P Gene

GeneHancer (GH) Regulatory Elements for H2AC5P Gene

Promoters and enhancers for H2AC5P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J026042 Promoter/Enhancer 2 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 +0.8 791 5 PPP1R10 SP1 CTCF LCORL MLX RBPJ POLR2A NR2F6 FOS CREB1 ENSG00000234816 H2AC5P H2BC3 H3C3 lnc-HIST1H3C-1 ENSG00000272462 ZNF322 HMGN4 BTN3A2 ABT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around H2AC5P on UCSC Golden Path with GeneCards custom track

Genomic Locations for H2AC5P Gene

Genomic Locations for H2AC5P Gene
chr6:26,043,900-26,044,550
(GRCh38/hg38)
Size:
651 bases
Orientation:
Plus strand

Genomic View for H2AC5P Gene

Genes around H2AC5P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
H2AC5P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for H2AC5P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for H2AC5P Gene

Proteins for H2AC5P Gene

Post-translational modifications for H2AC5P Gene

No Post-translational modifications

No data available for DME Specific Peptides for H2AC5P Gene

Domains & Families for H2AC5P Gene

Gene Families for H2AC5P Gene

HGNC:
genes like me logo Genes that share domains with H2AC5P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for H2AC5P Gene

Function for H2AC5P Gene

Phenotypes From GWAS Catalog for H2AC5P Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for H2AC5P Gene

Localization for H2AC5P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for H2AC5P Gene

Pathways & Interactions for H2AC5P Gene

PathCards logo

SuperPathways for H2AC5P Gene

No Data Available

Gene Ontology (GO) - Biological Process for H2AC5P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for H2AC5P Gene

Drugs & Compounds for H2AC5P Gene

No Compound Related Data Available

Transcripts for H2AC5P Gene

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for H2AC5P Gene

No ASD Table

Relevant External Links for H2AC5P Gene

GeneLoc Exon Structure for
H2AC5P
ECgene alternative splicing isoforms for
H2AC5P

No data available for mRNA/cDNA for H2AC5P Gene

Expression for H2AC5P Gene

NURSA nuclear receptor signaling pathways regulating expression of H2AC5P Gene:

H2AC5P
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for H2AC5P Gene

Orthologs for H2AC5P Gene

No data available for Orthologs and Evolution for H2AC5P Gene

Paralogs for H2AC5P Gene

No data available for Paralogs for H2AC5P Gene

Variants for H2AC5P Gene

Additional Variant Information for H2AC5P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
H2AC5P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for H2AC5P Gene

Disorders for H2AC5P Gene

No disorders were found for H2AC5P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for H2AC5P Gene

Publications for H2AC5P Gene

  1. Association of a human H1 histone gene with an H2A pseudogene and genes encoding H2B.1 and H3.1 histones. (PMID: 8227173) Kardalinou E … Doenecke D (Journal of cellular biochemistry 1993) 2 3 56

Products for H2AC5P Gene

Sources for H2AC5P Gene