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Aliases for H1FX-AS1 Gene

Subcategory (RNA class) for H1FX-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for H1FX-AS1 Gene

  • H1FX Antisense RNA 1 2 3 4 5
  • H1FX Antisense RNA 1 (Non-Protein Coding) 2 3
  • C3orf47 3 4
  • Putative Uncharacterized Protein H1FX-AS1 4
  • Chromosome 3 Open Reading Frame 47 2

External Ids for H1FX-AS1 Gene

Previous HGNC Symbols for H1FX-AS1 Gene

  • C3orf47

Previous GeneCards Identifiers for H1FX-AS1 Gene

  • GC03P129034

Summaries for H1FX-AS1 Gene

GeneCards Summary for H1FX-AS1 Gene

H1FX-AS1 (H1FX Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for H1FX-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for H1FX-AS1 Gene

Genomics for H1FX-AS1 Gene

GeneHancer (GH) Regulatory Elements for H1FX-AS1 Gene

Promoters and enhancers for H1FX-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around H1FX-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for H1FX-AS1 Gene

Genomic Locations for H1FX-AS1 Gene
chr3:129,315,392-129,326,225
(GRCh38/hg38)
Size:
10,834 bases
Orientation:
Plus strand
chr3:129,034,235-129,045,068
(GRCh37/hg19)
Size:
10,834 bases
Orientation:
Plus strand

Genomic View for H1FX-AS1 Gene

Genes around H1FX-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
H1FX-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for H1FX-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for H1FX-AS1 Gene

Proteins for H1FX-AS1 Gene

  • Protein details for H1FX-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q4G0G2-H1AS1_HUMAN
    Recommended name:
    Putative uncharacterized protein H1FX-AS1
    Protein Accession:
    Q4G0G2

    Protein attributes for H1FX-AS1 Gene

    Size:
    97 amino acids
    Molecular mass:
    11005 Da
    Quaternary structure:
    No Data Available

neXtProt entry for H1FX-AS1 Gene

Post-translational modifications for H1FX-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for H1FX-AS1 Gene

Domains & Families for H1FX-AS1 Gene

Protein Domains for H1FX-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with H1FX-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for H1FX-AS1 Gene

Function for H1FX-AS1 Gene

Phenotypes From GWAS Catalog for H1FX-AS1 Gene

Animal Model Products

CRISPR Products

miRNA for H1FX-AS1 Gene

miRTarBase miRNAs that target H1FX-AS1

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for H1FX-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for H1FX-AS1 Gene

Localization for H1FX-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for H1FX-AS1 Gene

Pathways & Interactions for H1FX-AS1 Gene

PathCards logo

SuperPathways for H1FX-AS1 Gene

No Data Available

Interacting Proteins for H1FX-AS1 Gene

Gene Ontology (GO) - Biological Process for H1FX-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for H1FX-AS1 Gene

Drugs & Compounds for H1FX-AS1 Gene

No Compound Related Data Available

Transcripts for H1FX-AS1 Gene

mRNA/cDNA for H1FX-AS1 Gene

Unigene Clusters for H1FX-AS1 Gene

H1FX antisense RNA 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for H1FX-AS1

Alternative Splicing Database (ASD) splice patterns (SP) for H1FX-AS1 Gene

No ASD Table

Relevant External Links for H1FX-AS1 Gene

GeneLoc Exon Structure for
H1FX-AS1
ECgene alternative splicing isoforms for
H1FX-AS1

Expression for H1FX-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for H1FX-AS1 Gene

SOURCE GeneReport for Unigene cluster for H1FX-AS1 Gene:

Hs.450096
genes like me logo Genes that share expression patterns with H1FX-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for H1FX-AS1 Gene

Orthologs for H1FX-AS1 Gene

Evolution for H1FX-AS1 Gene

ENSEMBL:
Gene Tree for H1FX-AS1 (if available)
TreeFam:
Gene Tree for H1FX-AS1 (if available)

No data available for Orthologs for H1FX-AS1 Gene

Paralogs for H1FX-AS1 Gene

No data available for Paralogs for H1FX-AS1 Gene

Variants for H1FX-AS1 Gene

Sequence variations from dbSNP and Humsavar for H1FX-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000300176 -- 129,314,955(+) C/G upstream_transcript_variant
rs1000650884 -- 129,314,784(+) C/A upstream_transcript_variant
rs1000757720 -- 129,321,170(+) CTCTC/CTC intron_variant
rs1000763063 -- 129,324,973(+) A/T downstream_transcript_variant
rs1000961253 -- 129,319,136(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for H1FX-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3346540 CNV duplication 20981092
nsv3997 CNV deletion 18451855
nsv472812 CNV novel sequence insertion 20440878
nsv520607 CNV gain+loss 19592680
nsv591651 CNV loss 21841781
nsv822244 CNV gain 20364138
nsv829722 CNV gain 17160897

Additional Variant Information for H1FX-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
H1FX-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for H1FX-AS1 Gene

Disorders for H1FX-AS1 Gene

Additional Disease Information for H1FX-AS1

No disorders were found for H1FX-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for H1FX-AS1 Gene

Publications for H1FX-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 2 3 58
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  3. Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing. (PMID: 28611215) Fei T … Brown M (Proceedings of the National Academy of Sciences of the United States of America 2017) 3 58
  4. Defining the Protein-Protein Interaction Network of the Human Protein Tyrosine Phosphatase Family. (PMID: 27432908) Li X … Wang W (Molecular & cellular proteomics : MCP 2016) 3 58
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for H1FX-AS1 Gene

Sources for H1FX-AS1 Gene

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