Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GYG2P1 Gene

Aliases for GYG2P1 Gene

  • Glycogenin 2 Pseudogene 1 2 3 5
  • Glycogenin 2 Pseudogene 2
  • GYG2P 3

External Ids for GYG2P1 Gene

Previous HGNC Symbols for GYG2P1 Gene

  • GYG2P

Previous GeneCards Identifiers for GYG2P1 Gene

  • GC0YM014475
  • GC0YM009172
  • GC0YM012354

Summaries for GYG2P1 Gene

GeneCards Summary for GYG2P1 Gene

GYG2P1 (Glycogenin 2 Pseudogene 1) is a Pseudogene.

Additional gene information for GYG2P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GYG2P1 Gene

Genomics for GYG2P1 Gene

GeneHancer (GH) Regulatory Elements for GYG2P1 Gene

Promoters and enhancers for GYG2P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0YJ012389 Enhancer 0.5 ENCODE 0.3 +28.4 28393 6.8 SP1 HNF1A JUND CTCF HNF4A NFIA GC0YP012381 GYG2P1
GH0YJ012359 Enhancer 0.4 ENCODE 0.2 +60.9 60942 1.4 NFIA CTCF ARSDP1 GC0YP012381 GYG2P1
GH0YJ012364 Enhancer 0.3 ENCODE 0.2 +56.1 56061 1.3 CREB1 ARSDP1 GC0YP012381 GYG2P1
GH0YJ012299 Enhancer 0.2 ENCODE 0.1 +121.6 121622 1 GC0YP012281 FAM8A4P GYG2P1
GH0YJ012214 Enhancer 0.2 ENCODE 0.1 +206.1 206089 1.2 RPS24P1 GYG2P1 PIR41552
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GYG2P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GYG2P1 Gene

Genomic Locations for GYG2P1 Gene
chrY:12,088,010-12,421,590
(GRCh38/hg38)
Size:
333,581 bases
Orientation:
Minus strand
chrY:14,475,147-14,533,389
(GRCh37/hg19)
Size:
58,243 bases
Orientation:
Minus strand

Genomic View for GYG2P1 Gene

Genes around GYG2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GYG2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GYG2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GYG2P1 Gene

Proteins for GYG2P1 Gene

Post-translational modifications for GYG2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GYG2P1 Gene

Domains & Families for GYG2P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GYG2P1 Gene

Function for GYG2P1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GYG2P1 Gene

Localization for GYG2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GYG2P1 Gene

Pathways & Interactions for GYG2P1 Gene

PathCards logo

SuperPathways for GYG2P1 Gene

No Data Available

Interacting Proteins for GYG2P1 Gene

Gene Ontology (GO) - Biological Process for GYG2P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GYG2P1 Gene

Drugs & Compounds for GYG2P1 Gene

No Compound Related Data Available

Transcripts for GYG2P1 Gene

mRNA/cDNA for GYG2P1 Gene

(4) Additional mRNA sequences :
(9) Selected AceView cDNA sequences:
(7) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Unigene Clusters for GYG2P1 Gene

Glycogenin 2 pseudogene 1:
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for GYG2P1 Gene

No ASD Table

Relevant External Links for GYG2P1 Gene

GeneLoc Exon Structure for
GYG2P1
ECgene alternative splicing isoforms for
GYG2P1

Expression for GYG2P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GYG2P1 Gene

mRNA differential expression in normal tissues according to GTEx for GYG2P1 Gene

This gene is overexpressed in Adipose - Visceral (Omentum) (x4.1).

NURSA nuclear receptor signaling pathways regulating expression of GYG2P1 Gene:

GYG2P1

SOURCE GeneReport for Unigene cluster for GYG2P1 Gene:

Hs.546221
genes like me logo Genes that share expression patterns with GYG2P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GYG2P1 Gene

Orthologs for GYG2P1 Gene

Evolution for GYG2P1 Gene

ENSEMBL:
Gene Tree for GYG2P1 (if available)
TreeFam:
Gene Tree for GYG2P1 (if available)

No data available for Orthologs for GYG2P1 Gene

Paralogs for GYG2P1 Gene

No data available for Paralogs for GYG2P1 Gene

Variants for GYG2P1 Gene

Sequence variations from dbSNP and Humsavar for GYG2P1 Gene

SNP ID Clin Chr 0Y pos Variation AA Info Type
rs1004634592 -- 12,421,285(-) G/A intron_variant
rs1015733741 -- 12,422,164(-) G/T upstream_transcript_variant
rs10436791 -- 12,406,807(-) G/A non_coding_transcript_variant
rs1056829777 -- 12,421,247(-) A/C intron_variant
rs111730211 -- 12,406,524(-) /T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GYG2P1 Gene

Variant ID Type Subtype PubMed ID
esv3575089 CNV loss 25503493

Additional Variant Information for GYG2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GYG2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GYG2P1 Gene

Disorders for GYG2P1 Gene

Additional Disease Information for GYG2P1

No disorders were found for GYG2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GYG2P1 Gene

Publications for GYG2P1 Gene

  1. Four evolutionary strata on the human X chromosome. (PMID: 10542153) Lahn BT … Page DC (Science (New York, N.Y.) 1999) 2 3 58
  2. Fine expression profiling of full-length transcripts using a size-unbiased cDNA library prepared with the vector-capping method. (PMID: 18487259) Oshikawa M … Kato S (DNA research : an international journal for rapid publication of reports on genes and genomes 2008) 3 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  4. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H … Page DC (Nature 2003) 3 58

Products for GYG2P1 Gene

Sources for GYG2P1 Gene

Content
Loading form....