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Aliases for GVQW3 Gene

Aliases for GVQW3 Gene

  • GVQW Motif Containing 3 2 3 5
  • GVQW Motif-Containing Protein 3 3 4
  • Protein GVQW3 3 4
  • Putative Uncharacterized Protein FLJ37770 3

External Ids for GVQW3 Gene

Summaries for GVQW3 Gene

GeneCards Summary for GVQW3 Gene

GVQW3 (GVQW Motif Containing 3) is a Protein Coding gene. An important paralog of this gene is SETMAR.

Additional gene information for GVQW3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GVQW3 Gene

Genomics for GVQW3 Gene

GeneHancer (GH) Regulatory Elements for GVQW3 Gene

Promoters and enhancers for GVQW3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J076379 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 605.1 -0.2 -218 3.8 ZFX ELF3 MNT ZNF148 NKRF POLR2A ZNF687 AHR MAFK SP7 THAP12 GVQW3 TSKU ENSG00000261578 LINC02757 LOC101928837 ENSG00000255135 LOC105369395
GH11J076383 Promoter 0.6 Ensembl 600.7 +1.9 1888 0.4 ZBTB20 GVQW3 ENSG00000272301
GH11J076390 Enhancer 0.7 Ensembl ENCODE 37.1 +10.9 10937 2.7 CEBPA GATAD2A SOX13 FOXA2 NFIL3 FOXA3 HLF ENSG00000271757 GVQW3 ENSG00000255135 EMSY GC11M076406 ENSG00000201756
GH11J076860 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE 10.3 +480.8 480788 4.2 HDGF SP1 ELF3 ZFX MNT MLLT1 ZNF121 POLR2A ZNF687 ZSCAN21 ACER3 EMSY ENSG00000271757 ENSG00000255135 ENSG00000272301 GVQW3 ENSG00000254988 OMP
GH11J076233 Enhancer 1.5 FANTOM5 ENCODE dbSUPER 11.6 -145.9 -145909 4.3 ZNF652 CC2D1A ZFX ELF3 ZKSCAN8 NKRF ZNF121 RERE GTF2F1 CSDE1 GC11M076236 TRP-TGG2-1 TRP-AGG2-4 PIR59119 EMSY RPS3 WNT11 GVQW3 SNORD15B ENSG00000272301
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GVQW3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GVQW3 Gene

Genomic Locations for GVQW3 Gene
chr11:76,381,313-76,414,619
(GRCh38/hg38)
Size:
33,307 bases
Orientation:
Plus strand
chr11:76,092,357-76,125,663
(GRCh37/hg19)
Size:
33,307 bases
Orientation:
Plus strand

Genomic View for GVQW3 Gene

Genes around GVQW3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GVQW3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GVQW3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GVQW3 Gene

Proteins for GVQW3 Gene

  • Protein details for GVQW3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q3ZCU0-GVQW3_HUMAN
    Recommended name:
    Protein GVQW3
    Protein Accession:
    Q3ZCU0
    Secondary Accessions:
    • Q8N9C3

    Protein attributes for GVQW3 Gene

    Size:
    254 amino acids
    Molecular mass:
    29382 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for GVQW3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for GVQW3 Gene

Post-translational modifications for GVQW3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for GVQW3 Gene

Domains & Families for GVQW3 Gene

Protein Domains for GVQW3 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with GVQW3: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GVQW3 Gene

Function for GVQW3 Gene

Phenotypes From GWAS Catalog for GVQW3 Gene

Phenotypes for GVQW3 Gene

genes like me logo Genes that share phenotypes with GVQW3: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GVQW3 Gene

Localization for GVQW3 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for GVQW3 gene
Compartment Confidence
nucleus 2
cytosol 2
extracellular 0
mitochondrion 0
peroxisome 0
golgi apparatus 0

Subcellular locations from the

Human Protein Atlas (HPA)
  • Centrosome (2)
  • Endoplasmic reticulum (2)
  • Nucleoplasm (2)
See all subcellular structures

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for GVQW3 Gene

Pathways & Interactions for GVQW3 Gene

PathCards logo

SuperPathways for GVQW3 Gene

No Data Available

Interacting Proteins for GVQW3 Gene

Gene Ontology (GO) - Biological Process for GVQW3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GVQW3 Gene

Drugs & Compounds for GVQW3 Gene

No Compound Related Data Available

Transcripts for GVQW3 Gene

mRNA/cDNA for GVQW3 Gene

(5) REFSEQ mRNAs :
(7) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for GVQW3 Gene

No ASD Table

Relevant External Links for GVQW3 Gene

GeneLoc Exon Structure for
GVQW3
ECgene alternative splicing isoforms for
GVQW3

Expression for GVQW3 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GVQW3 Gene

Orthologs for GVQW3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for GVQW3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 35
  • 99 (a)
OneToOne
LOC451433 34
  • 98.98 (n)
dog
(Canis familiaris)
Mammalia LOC102151263 34
  • 91.03 (n)
-- 35
  • 64 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 30 (a)
OneToOne
Species where no ortholog for GVQW3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for GVQW3 Gene

ENSEMBL:
Gene Tree for GVQW3 (if available)
TreeFam:
Gene Tree for GVQW3 (if available)

Paralogs for GVQW3 Gene

Paralogs for GVQW3 Gene

Pseudogenes.org Pseudogenes for GVQW3 Gene

genes like me logo Genes that share paralogs with GVQW3: view

Variants for GVQW3 Gene

Sequence variations from dbSNP and Humsavar for GVQW3 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000136620 -- 76,380,004(+) T/C upstream_transcript_variant
rs1000175259 -- 76,384,483(+) C/T 3_prime_UTR_variant, intron_variant
rs1000203085 -- 76,384,189(+) T/C 3_prime_UTR_variant, intron_variant
rs1000218844 -- 76,411,190(+) G/A 3_prime_UTR_variant, genic_downstream_transcript_variant, non_coding_transcript_variant
rs1000229417 -- 76,399,929(+) T/G genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GVQW3 Gene

Variant ID Type Subtype PubMed ID
esv2664049 CNV deletion 23128226
esv28324 CNV loss 19812545
esv3626869 CNV loss 21293372

Additional Variant Information for GVQW3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GVQW3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GVQW3 Gene

Disorders for GVQW3 Gene

Additional Disease Information for GVQW3

No disorders were found for GVQW3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GVQW3 Gene

Publications for GVQW3 Gene

  1. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor TD … Sakaki Y (Nature 2006) 3 4 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for GVQW3 Gene

Sources for GVQW3 Gene

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