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Aliases for GUSBP4 Gene

Aliases for GUSBP4 Gene

  • GUSB Pseudogene 4 2 3
  • Glucuronidase, Beta Pseudogene 4 2 3 5
  • Spinal Muscular Atrophy Candidate Gene 3-Like 2 3
  • Glucuronidase, Beta-Like 2 2 3
  • Chromosome 6 Open Reading Frame 216 2
  • XXbac-BPGBPG55C20.2 3
  • C6orf216 3
  • SMA3-L 3
  • GUSBL2 3
  • SMAC3L 3

External Ids for GUSBP4 Gene

Previous HGNC Symbols for GUSBP4 Gene

  • C6orf216
  • SMAC3L
  • GUSBL2

Previous GeneCards Identifiers for GUSBP4 Gene

  • GC00U914166
  • GC06M057288
  • GC06M058249
  • GC06M058274
  • GC06M058250

Summaries for GUSBP4 Gene

GeneCards Summary for GUSBP4 Gene

GUSBP4 (GUSB Pseudogene 4) is a Pseudogene.

Additional gene information for GUSBP4 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GUSBP4 Gene

Genomics for GUSBP4 Gene

GeneHancer (GH) Regulatory Elements for GUSBP4 Gene

Promoters and enhancers for GUSBP4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J057960 Promoter/Enhancer 1.5 Ensembl ENCODE 600.7 +0.1 145 2.2 CC2D1A CTCF ELF3 CEBPG GTF2F1 ZNF384 ZSCAN21 AHR TFE3 SP7 LINC00680 LOC101927293 GUSBP4 ENSG00000283352 ENSG00000225096 PRIM2 PIR36615
GH06J057171 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.6 +787.6 787636 5 SP1 ZFX MNT SIX5 ZNF148 NKRF POLR2A MLLT1 GTF2F1 ZNF687 BAG2 ZNF451-AS1 ZNF451 KIAA1586 GUSBP4 ENSG00000272316
GH06J057241 Enhancer 1.3 Ensembl ENCODE dbSUPER 12.2 +718.7 718678 1.7 ZNF384 ZSCAN21 SP7 ZNF174 ZBTB8A PRDM10 ZEB2 ZNF639 ZNF629 ZNF692 GC06M057241 ZNF451 PRIM2 BAG2 GUSBP4 ENSG00000272316 KIAA1586 ZNF451-AS1 BEND6 GC06P057245
GH06J058191 Enhancer 0.8 Ensembl dbSUPER 10.2 -232.1 -232094 0.9 ZSCAN21 ZNF341 RBAK ARNT ZBTB44 ZSCAN5C TSHZ1 ATF2 ZNF580 ZBTB17 LINC00680 ENSG00000272316 GUSBP4 RBBP4P4 PIR53422 ENSG00000225096
GH06J057790 Enhancer 0.5 Ensembl 5.2 +170.0 170045 1.6 ZNF680 ZNF512 ZNF366 ZNF513 ZNF114 LINC00680 ENSG00000272541 GUSBP4 GC06M057797 LOC105375103 ENSG00000266579
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GUSBP4 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GUSBP4 Gene

Genomic Locations for GUSBP4 Gene
chr6:57,919,784-57,961,446
(GRCh38/hg38)
Size:
41,663 bases
Orientation:
Minus strand
chr6:58,246,051-58,287,724
(GRCh37/hg19)
Size:
41,674 bases
Orientation:
Minus strand

Genomic View for GUSBP4 Gene

Genes around GUSBP4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GUSBP4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GUSBP4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GUSBP4 Gene

Proteins for GUSBP4 Gene

Post-translational modifications for GUSBP4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GUSBP4 Gene

Domains & Families for GUSBP4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GUSBP4 Gene

Function for GUSBP4 Gene

Molecular function for GUSBP4 Gene

GENATLAS Biochemistry:
beta-glucuronidase pseudogene 4,including GUSB exons 5,9,10,11

Phenotypes From GWAS Catalog for GUSBP4 Gene

genes like me logo Genes that share phenotypes with GUSBP4: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for GUSBP4

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GUSBP4 Gene

Localization for GUSBP4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GUSBP4 Gene

Pathways & Interactions for GUSBP4 Gene

PathCards logo

SuperPathways for GUSBP4 Gene

No Data Available

Interacting Proteins for GUSBP4 Gene

Gene Ontology (GO) - Biological Process for GUSBP4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GUSBP4 Gene

Drugs & Compounds for GUSBP4 Gene

No Compound Related Data Available

Transcripts for GUSBP4 Gene

mRNA/cDNA for GUSBP4 Gene

(3) REFSEQ mRNAs :
(11) Additional mRNA sequences :
(26) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Unigene Clusters for GUSBP4 Gene

Glucuronidase, beta pseudogene 4:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for GUSBP4

Alternative Splicing Database (ASD) splice patterns (SP) for GUSBP4 Gene

No ASD Table

Relevant External Links for GUSBP4 Gene

GeneLoc Exon Structure for
GUSBP4
ECgene alternative splicing isoforms for
GUSBP4

Expression for GUSBP4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GUSBP4 Gene

NURSA nuclear receptor signaling pathways regulating expression of GUSBP4 Gene:

GUSBP4

SOURCE GeneReport for Unigene cluster for GUSBP4 Gene:

Hs.561539
genes like me logo Genes that share expression patterns with GUSBP4: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GUSBP4 Gene

Orthologs for GUSBP4 Gene

Evolution for GUSBP4 Gene

ENSEMBL:
Gene Tree for GUSBP4 (if available)
TreeFam:
Gene Tree for GUSBP4 (if available)

No data available for Orthologs for GUSBP4 Gene

Paralogs for GUSBP4 Gene

No data available for Paralogs for GUSBP4 Gene

Variants for GUSBP4 Gene

Sequence variations from dbSNP and Humsavar for GUSBP4 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000094809 -- 57,935,653(-) G/A intron_variant
rs1000107151 -- 57,923,638(-) A/G intron_variant
rs1000554779 -- 57,921,945(-) G/A intron_variant
rs1000566847 -- 57,928,151(-) C/T intron_variant
rs1000700215 -- 57,934,482(-) T/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GUSBP4 Gene

Variant ID Type Subtype PubMed ID
dgv10677n54 CNV gain 21841781
dgv10686n54 CNV gain 21841781
dgv1184e214 CNV gain 21293372
dgv1782e212 CNV gain 25503493
dgv3323n106 CNV duplication 24896259
dgv3531e59 CNV duplication 20981092
dgv3532e59 CNV duplication 20981092
dgv5967n100 CNV gain 25217958
dgv5968n100 CNV gain 25217958
dgv5969n100 CNV gain 25217958
dgv5975n100 CNV gain 25217958
dgv5976n100 CNV gain 25217958
dgv5977n100 CNV gain 25217958
dgv5978n100 CNV gain 25217958
esv22645 CNV gain+loss 19812545
esv2453782 CNV gain 19546169
esv2759432 CNV gain 17122850
esv2760987 CNV gain+loss 21179565
esv3422773 CNV duplication 20981092
esv3448834 CNV duplication 20981092
esv3890851 CNV gain 25118596
nsv1026793 CNV gain 25217958
nsv1029158 CNV loss 25217958
nsv1077474 CNV duplication 25765185
nsv1124941 CNV duplication 24896259
nsv1132627 CNV duplication 24896259
nsv1145967 CNV duplication 26484159
nsv1161384 CNV duplication 26073780
nsv428148 CNV gain 18775914
nsv462956 CNV gain 19166990
nsv462957 CNV gain 19166990
nsv470820 CNV gain 18288195
nsv510916 OTHER complex 20534489
nsv515916 CNV gain+loss 19592680
nsv523720 CNV gain 19592680
nsv527797 CNV gain 19592680
nsv603193 CNV gain 21841781
nsv603238 CNV gain 21841781
nsv7906 CNV loss 18304495
nsv821647 CNV loss 15273396
nsv830667 CNV gain 17160897
nsv950184 CNV duplication 24416366
nsv965801 CNV duplication 23825009
nsv965802 CNV duplication 23825009
nsv969404 CNV duplication 23825009
nsv969409 CNV duplication 23825009
nsv969410 CNV duplication 23825009
nsv969481 CNV duplication 23825009
nsv970130 CNV duplication 23825009
nsv981219 CNV duplication 23825009

Additional Variant Information for GUSBP4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GUSBP4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GUSBP4 Gene

Disorders for GUSBP4 Gene

Additional Disease Information for GUSBP4

No disorders were found for GUSBP4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GUSBP4 Gene

Publications for GUSBP4 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  5. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 58

Products for GUSBP4 Gene

Sources for GUSBP4 Gene

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