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Aliases for GTSE1-DT Gene

Subcategory (RNA class) for GTSE1-DT Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for GTSE1-DT Gene

  • GTSE1 Divergent Transcript 2 3 5
  • GTSE1 Antisense RNA 1 (Head To Head) 2 3
  • LL22NC03-5H6.6 3
  • GTSE1-AS1 3
  • CN5H6.4 3

External Ids for GTSE1-DT Gene

ORGUL Members for GTSE1-DT Gene

Previous HGNC Symbols for GTSE1-DT Gene

  • GTSE1-AS1

Summaries for GTSE1-DT Gene

GeneCards Summary for GTSE1-DT Gene

GTSE1-DT (GTSE1 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for GTSE1-DT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GTSE1-DT Gene

Genomics for GTSE1-DT Gene

GeneHancer (GH) Regulatory Elements for GTSE1-DT Gene

Promoters and enhancers for GTSE1-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J046294 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 600.7 +0.0 28 3.5 HDGF SP1 CC2D1A ZFX ELF3 MNT SIX5 NKRF POLR2A GTF2F1 PIR50586 GTSE1-DT GTSE1 TTC38 PKDREJ TRMU CDPF1
GH22J046314 Enhancer 0.7 ENCODE 0.4 -17.8 -17799 0.2 CTCF RAD21 RXRA ARID2 ZNF143 REST TRIM22 SCRT2 MGA RUNX3 TTC38 PKDREJ CDPF1 PPARA TRMU GTSE1-DT GTSE1
GH22J046306 Enhancer 0.5 Ensembl 0.4 -9.7 -9741 0.8 TRIM24 CEBPA CEBPB ZBTB33 ZNF280C PKDREJ TTC38 GTSE1-DT GTSE1 TRMU
GH22J046303 Enhancer 0.4 Ensembl ENCODE 0.4 -7.1 -7089 1.1 TTC38 PKDREJ GTSE1-DT GTSE1 TRMU
GH22J046328 Promoter 0.5 EPDnew 0.3 -32.2 -32220 0.1 TRMU GTSE1 CELSR1 ENSG00000234869 PPARA GTSE1-DT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GTSE1-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for GTSE1-DT Gene

Genomic Locations for GTSE1-DT Gene
chr22:46,295,143-46,296,660
(GRCh38/hg38)
Size:
1,518 bases
Orientation:
Minus strand
chr22:46,691,040-46,692,557
(GRCh37/hg19)
Size:
1,518 bases
Orientation:
Minus strand

Genomic View for GTSE1-DT Gene

Genes around GTSE1-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GTSE1-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GTSE1-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GTSE1-DT Gene

Proteins for GTSE1-DT Gene

Post-translational modifications for GTSE1-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for GTSE1-DT Gene

Domains & Families for GTSE1-DT Gene

Suggested Antigen Peptide Sequences for GTSE1-DT Gene

GenScript: Design optimal peptide antigens:
  • HCG1993518 (Q6ICE7_HUMAN)

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for GTSE1-DT Gene

Function for GTSE1-DT Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GTSE1-DT Gene

Localization for GTSE1-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GTSE1-DT Gene

Pathways & Interactions for GTSE1-DT Gene

PathCards logo

SuperPathways for GTSE1-DT Gene

No Data Available

Interacting Proteins for GTSE1-DT Gene

Gene Ontology (GO) - Biological Process for GTSE1-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GTSE1-DT Gene

Drugs & Compounds for GTSE1-DT Gene

No Compound Related Data Available

Transcripts for GTSE1-DT Gene

mRNA/cDNA for GTSE1-DT Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for GTSE1-DT Gene

No ASD Table

Relevant External Links for GTSE1-DT Gene

GeneLoc Exon Structure for
GTSE1-DT
ECgene alternative splicing isoforms for
GTSE1-DT

Expression for GTSE1-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GTSE1-DT Gene

Orthologs for GTSE1-DT Gene

Evolution for GTSE1-DT Gene

ENSEMBL:
Gene Tree for GTSE1-DT (if available)
TreeFam:
Gene Tree for GTSE1-DT (if available)

No data available for Orthologs for GTSE1-DT Gene

Paralogs for GTSE1-DT Gene

No data available for Paralogs for GTSE1-DT Gene

Variants for GTSE1-DT Gene

Sequence variations from dbSNP and Humsavar for GTSE1-DT Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000277612 -- 46,294,877(-) C/T downstream_transcript_variant
rs1001336112 -- 46,296,525(-) C/T non_coding_transcript_variant
rs1002330169 -- 46,296,646(-) A/G non_coding_transcript_variant
rs1003022811 -- 46,296,775(-) G/C/T upstream_transcript_variant
rs1003603010 -- 46,295,458(-) C/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for GTSE1-DT Gene

Variant ID Type Subtype PubMed ID
dgv2469n106 OTHER inversion 24896259
esv2758844 CNV gain+loss 17122850
nsv1152661 OTHER inversion 26484159
nsv428393 CNV gain 18775914
nsv471214 CNV loss 18288195
nsv589136 CNV gain 21841781
nsv829281 CNV gain 20364138
nsv829293 CNV gain 20364138

Additional Variant Information for GTSE1-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GTSE1-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GTSE1-DT Gene

Disorders for GTSE1-DT Gene

No disorders were found for GTSE1-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GTSE1-DT Gene

Publications for GTSE1-DT Gene

  1. Genomic annotation of 15,809 ESTs identified from pooled early gestation human eyes. (PMID: 16368877) Choy KW … Pang CP (Physiological genomics 2006) 3 58
  2. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins JE … Dunham I (Genome biology 2004) 3 58

Products for GTSE1-DT Gene

Sources for GTSE1-DT Gene

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