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Aliases for GTF3C2-AS1 Gene

Subcategory (RNA class) for GTF3C2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for GTF3C2-AS1 Gene

  • GTF3C2 Antisense RNA 1 2 3 5

External Ids for GTF3C2-AS1 Gene

Summaries for GTF3C2-AS1 Gene

GeneCards Summary for GTF3C2-AS1 Gene

GTF3C2-AS1 (GTF3C2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for GTF3C2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GTF3C2-AS1 Gene

Genomics for GTF3C2-AS1 Gene

GeneHancer (GH) Regulatory Elements for GTF3C2-AS1 Gene

Promoters and enhancers for GTF3C2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J027334 Enhancer 0.3 FANTOM5 600.7 -1.0 -964 0.2 GTF3C2-AS1 DPYSL5 C2orf16 MPV17 GTF3C2
GH02J027662 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 33.5 +328.4 328366 3 SP1 ZFX CC2D1A ELF3 MNT SIX5 NKRF POLR2A MLLT1 CEBPG SUPT7L SLC4A1AP IFT172 GTF3C2 CAD ZNF512 GPN1 NRBP1 EIF2B4 SNX17
GH02J027402 Enhancer 0.7 Ensembl 59.3 +67.1 67066 0.4 ZNF560 ZBTB33 ZBTB8A PRDM12 ZNF629 ZNF140 ZXDB ZNF266 ZNF623 ZBTB11 CAD GTF3C2 EIF2B4 SNX17 GTF3C2-AS1 ENSG00000234072 GPN1 NRBP1 TMEM214 IFT172
GH02J026717 Enhancer 1.9 VISTA FANTOM5 Ensembl ENCODE dbSUPER 22.3 -613.3 -613280 10.1 ZFX ZNF148 ZNF121 RERE GTF2F1 NFIB BACH1 MAFK ELF1 SP1 EIF2B4 GPN1 CAD NRBP1 GTF3C2-AS1 ASXL2 CENPA ENSG00000234072 KCNK3 TMEM214
GH02J027069 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 14.6 -259.0 -259041 14.9 SP1 ZFX CC2D1A ELF3 MNT SIX5 ZNF148 NKRF POLR2A MLLT1 EMILIN1 OST4 CAD GTF3C2 ENSG00000234072 KHK NRBP1 SNX17 TMEM214 GPN1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GTF3C2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GTF3C2-AS1 Gene

Genomic Locations for GTF3C2-AS1 Gene
chr2:27,335,535-27,342,599
(GRCh38/hg38)
Size:
7,065 bases
Orientation:
Plus strand
chr2:27,558,402-27,565,466
(GRCh37/hg19)
Size:
7,065 bases
Orientation:
Plus strand

Genomic View for GTF3C2-AS1 Gene

Genes around GTF3C2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GTF3C2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GTF3C2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GTF3C2-AS1 Gene

Proteins for GTF3C2-AS1 Gene

Post-translational modifications for GTF3C2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GTF3C2-AS1 Gene

Domains & Families for GTF3C2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GTF3C2-AS1 Gene

Function for GTF3C2-AS1 Gene

Phenotypes From GWAS Catalog for GTF3C2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GTF3C2-AS1 Gene

Localization for GTF3C2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GTF3C2-AS1 Gene

Pathways & Interactions for GTF3C2-AS1 Gene

PathCards logo

SuperPathways for GTF3C2-AS1 Gene

No Data Available

Interacting Proteins for GTF3C2-AS1 Gene

Gene Ontology (GO) - Biological Process for GTF3C2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GTF3C2-AS1 Gene

Drugs & Compounds for GTF3C2-AS1 Gene

No Compound Related Data Available

Transcripts for GTF3C2-AS1 Gene

mRNA/cDNA for GTF3C2-AS1 Gene

(1) Additional mRNA sequences :
(13) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(14) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for GTF3C2-AS1 Gene

No ASD Table

Relevant External Links for GTF3C2-AS1 Gene

GeneLoc Exon Structure for
GTF3C2-AS1
ECgene alternative splicing isoforms for
GTF3C2-AS1

Expression for GTF3C2-AS1 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GTF3C2-AS1 Gene

Orthologs for GTF3C2-AS1 Gene

Evolution for GTF3C2-AS1 Gene

ENSEMBL:
Gene Tree for GTF3C2-AS1 (if available)
TreeFam:
Gene Tree for GTF3C2-AS1 (if available)

No data available for Orthologs for GTF3C2-AS1 Gene

Paralogs for GTF3C2-AS1 Gene

No data available for Paralogs for GTF3C2-AS1 Gene

Variants for GTF3C2-AS1 Gene

Sequence variations from dbSNP and Humsavar for GTF3C2-AS1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000167052 -- 27,334,501(+) T/C upstream_transcript_variant
rs1001579321 -- 27,336,615(+) TTATATTAT/TTAT intron_variant
rs1002437312 -- 27,337,375(+) G/A/T intron_variant
rs1002569030 -- 27,334,786(+) G/A/C upstream_transcript_variant
rs1002763817 -- 27,337,714(+) A/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for GTF3C2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3575209 CNV gain 25503493
nsv2654 CNV insertion 18451855
nsv581244 CNV loss 21841781
nsv833614 CNV gain 17160897

Additional Variant Information for GTF3C2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GTF3C2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GTF3C2-AS1 Gene

Disorders for GTF3C2-AS1 Gene

Additional Disease Information for GTF3C2-AS1

No disorders were found for GTF3C2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GTF3C2-AS1 Gene

Publications for GTF3C2-AS1 Gene

  1. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 58

Products for GTF3C2-AS1 Gene

Sources for GTF3C2-AS1 Gene

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