Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GTF3AP1 Gene

Aliases for GTF3AP1 Gene

  • General Transcription Factor IIIA Pseudogene 1 2 3 5

External Ids for GTF3AP1 Gene

Summaries for GTF3AP1 Gene

GeneCards Summary for GTF3AP1 Gene

GTF3AP1 (General Transcription Factor IIIA Pseudogene 1) is a Pseudogene.

Additional gene information for GTF3AP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GTF3AP1 Gene

Genomics for GTF3AP1 Gene

GeneHancer (GH) Regulatory Elements for GTF3AP1 Gene

Promoters and enhancers for GTF3AP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J006215 Promoter/Enhancer 0.9 EPDnew Ensembl 0.4 +19.0 18961 1 ZNF341 SCRT2 IL33 GTF3AP1
GH09J006152 Enhancer 0.9 Ensembl ENCODE 0.3 -42.6 -42616 1.8 BRCA1 CEBPB CHD2 JUN SP1 JUND NFYB PKNOX1 EP300 PRDM1 ERMP1 GTF3AP1 ENSG00000228739
GH09J006198 Enhancer 0.3 Ensembl 0.7 +2.7 2734 1.1 FOXA1 GTF3AP1 IL33
GH09J006132 Enhancer 0.7 Ensembl ENCODE 0.2 -62.2 -62150 1.6 IKZF1 IKZF2 RUNX3 BCL11A GABPA GTF3AP1 ENSG00000228739
GH09J006101 Enhancer 0.9 Ensembl ENCODE 0.2 -92.6 -92640 2.6 SP7 CREB1 ZNF639 ZNF629 CEBPB SCRT2 JUN RCOR1 JUND ZNF157 ENSG00000228739 GTF3AP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GTF3AP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GTF3AP1 Gene

Genomic Locations for GTF3AP1 Gene
chr9:6,195,934-6,197,248
(GRCh38/hg38)
Size:
1,315 bases
Orientation:
Plus strand
chr9:6,195,934-6,197,248
(GRCh37/hg19)
Size:
1,315 bases
Orientation:
Plus strand

Genomic View for GTF3AP1 Gene

Genes around GTF3AP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GTF3AP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GTF3AP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GTF3AP1 Gene

Proteins for GTF3AP1 Gene

Post-translational modifications for GTF3AP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GTF3AP1 Gene

Domains & Families for GTF3AP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GTF3AP1 Gene

Function for GTF3AP1 Gene

Phenotypes From GWAS Catalog for GTF3AP1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GTF3AP1 Gene

Localization for GTF3AP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GTF3AP1 Gene

Pathways & Interactions for GTF3AP1 Gene

PathCards logo

SuperPathways for GTF3AP1 Gene

No Data Available

Interacting Proteins for GTF3AP1 Gene

Gene Ontology (GO) - Biological Process for GTF3AP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GTF3AP1 Gene

Drugs & Compounds for GTF3AP1 Gene

No Compound Related Data Available

Transcripts for GTF3AP1 Gene

mRNA/cDNA for GTF3AP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for GTF3AP1 Gene

No ASD Table

Relevant External Links for GTF3AP1 Gene

GeneLoc Exon Structure for
GTF3AP1
ECgene alternative splicing isoforms for
GTF3AP1

Expression for GTF3AP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GTF3AP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of GTF3AP1 Gene:

GTF3AP1
genes like me logo Genes that share expression patterns with GTF3AP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GTF3AP1 Gene

Orthologs for GTF3AP1 Gene

Evolution for GTF3AP1 Gene

ENSEMBL:
Gene Tree for GTF3AP1 (if available)
TreeFam:
Gene Tree for GTF3AP1 (if available)

No data available for Orthologs for GTF3AP1 Gene

Paralogs for GTF3AP1 Gene

No data available for Paralogs for GTF3AP1 Gene

Variants for GTF3AP1 Gene

Additional Variant Information for GTF3AP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GTF3AP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GTF3AP1 Gene

Disorders for GTF3AP1 Gene

No disorders were found for GTF3AP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GTF3AP1 Gene

Publications for GTF3AP1 Gene

No publications were found for GTF3AP1 Gene.

No data available for External Links for GTF3AP1 Gene

Products for GTF3AP1 Gene

Sources for GTF3AP1 Gene

Content
Loading form....