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Aliases for GTF2IRD2P1 Gene

Aliases for GTF2IRD2P1 Gene

  • GTF2I Repeat Domain Containing 2 Pseudogene 1 2 3 5
  • General Transcription Factor II I Repeat Domain 2 Pseudogene 3
  • GTF2I Repeat Domain Containing 2 Pseudogene 2
  • GTF2IRD2 Pseudogene 3
  • GTF2IRD2P 3

External Ids for GTF2IRD2P1 Gene

Previous HGNC Symbols for GTF2IRD2P1 Gene

  • GTF2IRD2P

Previous GeneCards Identifiers for GTF2IRD2P1 Gene

  • GC07M072656
  • GC07M071989

Summaries for GTF2IRD2P1 Gene

GeneCards Summary for GTF2IRD2P1 Gene

GTF2IRD2P1 (GTF2I Repeat Domain Containing 2 Pseudogene 1) is a Pseudogene. Diseases associated with GTF2IRD2P1 include Oral Squamous Cell Carcinoma.

Additional gene information for GTF2IRD2P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GTF2IRD2P1 Gene

Genomics for GTF2IRD2P1 Gene

GeneHancer (GH) Regulatory Elements for GTF2IRD2P1 Gene

Promoters and enhancers for GTF2IRD2P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J072827 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 22.6 +450.9 450913 4.8 SP1 ZFX MNT SIX5 NKRF POLR2A MLLT1 ZNF121 CEBPG GTF2F1 TYW1B SBDSP1 PIR36920 STAG3L3 POM121 POM121B NSUN5P2 TBL2 FKBP6 NSUN5
GH07J073645 Enhancer 1.2 FANTOM5 ENCODE 33.8 -366.8 -366793 3.7 ELF3 MNT PPARG SP5 KLF14 PRDM1 MTA1 KAT8 GLIS2 RXRA NSUN5P2 POM121 STAG3L3 GTF2IRD2P1 MIR590 METTL27 POM121B BAZ1B VPS37D DNAJC30
GH07J073888 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 23.6 -613.0 -613026 8.7 ZNF121 ZNF680 MTA1 GMEB1 POLR2A PKNOX1 IKZF1 ZBTB8A RFX1 PRDM12 NSUN5P2 STAG3L3 POM121B MIR590 BAZ1B METTL27 GTF2IRD2 TBL2 ENSG00000232729 NSUN5
GH07J074252 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 12.6 -975.1 -975060 4.4 SP1 ZFX ELF3 MNT SIX5 NKRF POLR2A MLLT1 ZNF121 CEBPG RFC2 GC07M074256 GC07P074254 BAZ1B POM121B MIR590 GTF2IRD2P1 GTF2IRD2 GTF2IRD2B
GH07J073667 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 13.3 -388.3 -388282 2.4 SP1 ZFX CTCF CC2D1A ELF3 MNT ZNF148 NKRF ZNF121 GTF2F1 VPS37D STAG3L3 POM121B POM121 FKBP6 TBL2 BUD23 GTF2IRD2P1 NSUN5P2 MIR590
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GTF2IRD2P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GTF2IRD2P1 Gene

Genomic Locations for GTF2IRD2P1 Gene
chr7:73,242,751-73,280,119
(GRCh38/hg38)
Size:
37,369 bases
Orientation:
Minus strand
chr7:72,656,902-72,694,143
(GRCh37/hg19)
Size:
37,242 bases
Orientation:
Minus strand

Genomic View for GTF2IRD2P1 Gene

Genes around GTF2IRD2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GTF2IRD2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GTF2IRD2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GTF2IRD2P1 Gene

Proteins for GTF2IRD2P1 Gene

Post-translational modifications for GTF2IRD2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GTF2IRD2P1 Gene

Domains & Families for GTF2IRD2P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GTF2IRD2P1 Gene

Function for GTF2IRD2P1 Gene

Phenotypes From GWAS Catalog for GTF2IRD2P1 Gene

genes like me logo Genes that share phenotypes with GTF2IRD2P1: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GTF2IRD2P1 Gene

Localization for GTF2IRD2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GTF2IRD2P1 Gene

Pathways & Interactions for GTF2IRD2P1 Gene

PathCards logo

SuperPathways for GTF2IRD2P1 Gene

No Data Available

Interacting Proteins for GTF2IRD2P1 Gene

Gene Ontology (GO) - Biological Process for GTF2IRD2P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GTF2IRD2P1 Gene

Drugs & Compounds for GTF2IRD2P1 Gene

No Compound Related Data Available

Transcripts for GTF2IRD2P1 Gene

mRNA/cDNA for GTF2IRD2P1 Gene

(1) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Unigene Clusters for GTF2IRD2P1 Gene

GTF2I repeat domain containing 2 pseudogene 1:
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for GTF2IRD2P1 Gene

No ASD Table

Relevant External Links for GTF2IRD2P1 Gene

GeneLoc Exon Structure for
GTF2IRD2P1
ECgene alternative splicing isoforms for
GTF2IRD2P1

Expression for GTF2IRD2P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GTF2IRD2P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of GTF2IRD2P1 Gene:

GTF2IRD2P1

SOURCE GeneReport for Unigene cluster for GTF2IRD2P1 Gene:

Hs.651178
genes like me logo Genes that share expression patterns with GTF2IRD2P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GTF2IRD2P1 Gene

Orthologs for GTF2IRD2P1 Gene

Evolution for GTF2IRD2P1 Gene

ENSEMBL:
Gene Tree for GTF2IRD2P1 (if available)
TreeFam:
Gene Tree for GTF2IRD2P1 (if available)

No data available for Orthologs for GTF2IRD2P1 Gene

Paralogs for GTF2IRD2P1 Gene

No data available for Paralogs for GTF2IRD2P1 Gene

Variants for GTF2IRD2P1 Gene

Additional Variant Information for GTF2IRD2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GTF2IRD2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GTF2IRD2P1 Gene

Disorders for GTF2IRD2P1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for GTF2IRD2P1 Gene - From: LncRNADisease and GeneCards

Disorder Aliases PubMed IDs
oral squamous cell carcinoma
  • mouth squamous cell carcinoma
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for GTF2IRD2P1

genes like me logo Genes that share disorders with GTF2IRD2P1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for GTF2IRD2P1 Gene

Publications for GTF2IRD2P1 Gene

  1. Isolation and characterisation of GTF2IRD2, a novel fusion gene and member of the TFII-I family of transcription factors, deleted in Williams-Beuren syndrome. (PMID: 15100712) Tipney HJ … Tassabehji M (European journal of human genetics : EJHG 2004) 2 3 58
  2. Potential role of differentially expressed lncRNAs in the pathogenesis of oral squamous cell carcinoma. (PMID: 26276270) Zhang S … Xu B (Archives of oral biology 2015) 3 58

Products for GTF2IRD2P1 Gene

Sources for GTF2IRD2P1 Gene

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