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Aliases for GTF2IRD1P1 Gene

Aliases for GTF2IRD1P1 Gene

  • GTF2I Repeat Domain Containing 1 Pseudogene 1 2 3 5
  • GTF2I Repeat Domain Containing 1 Pseusogene 1 3

External Ids for GTF2IRD1P1 Gene

Previous GeneCards Identifiers for GTF2IRD1P1 Gene

  • GC07M066277

Summaries for GTF2IRD1P1 Gene

GeneCards Summary for GTF2IRD1P1 Gene

GTF2IRD1P1 (GTF2I Repeat Domain Containing 1 Pseudogene 1) is a Pseudogene.

Additional gene information for GTF2IRD1P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GTF2IRD1P1 Gene

Genomics for GTF2IRD1P1 Gene

GeneHancer (GH) Regulatory Elements for GTF2IRD1P1 Gene

Promoters and enhancers for GTF2IRD1P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J066844 Promoter/Enhancer 1.6 Ensembl ENCODE 600.7 -1.5 -1508 5.6 MTA3 CC2D1A SP1 ZFX ELF3 MNT SIX5 NKRF POLR2A MLLT1 GTF2IP23 GTF2IRD1P1 LINC02604 ENSG00000234500 ENSG00000229180 RABGEF1 TYW1 ENSG00000273448 TMEM248 LINC00174
GH07J066837 Enhancer 0.8 Ensembl ENCODE 0.4 +7.6 7614 0.3 CC2D1A CTCF RAD21 ARID2 ZNF143 REST TRIM28 BCOR CBX1 RB1 GTF2IRD1P1 GC07M066814
GH07J066817 Enhancer 0.7 Ensembl 0.3 +27.3 27281 1.6 ZBTB8A PRDM12 ZNF623 ZBTB11 BCOR ZC3H11A ZNF202 ZFP64 ZNF664 ZNF781 ENSG00000234500 LINC02604 ENSG00000229180 VKORC1L1 ENSG00000244657 TYW1 ENSG00000230189 RABGEF1 KCTD7 GUSB
GH07J066812 Enhancer 0.2 Ensembl 0.3 +31.7 31682 0.8 GC07P066813 LINC02604 RABGEF1 CRCP GC07M066814 GTF2IRD1P1
GH07J066815 Enhancer 0.2 Ensembl 0.3 +29.0 28981 0.6 RABGEF1 LINC02604 GC07P066813 GC07M066814 GTF2IRD1P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GTF2IRD1P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GTF2IRD1P1 Gene

Genomic Locations for GTF2IRD1P1 Gene
chr7:66,809,993-66,844,882
(GRCh38/hg38)
Size:
34,890 bases
Orientation:
Minus strand
chr7:66,274,980-66,309,813
(GRCh37/hg19)
Size:
34,834 bases
Orientation:
Minus strand

Genomic View for GTF2IRD1P1 Gene

Genes around GTF2IRD1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GTF2IRD1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GTF2IRD1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GTF2IRD1P1 Gene

Proteins for GTF2IRD1P1 Gene

Post-translational modifications for GTF2IRD1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GTF2IRD1P1 Gene

Domains & Families for GTF2IRD1P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GTF2IRD1P1 Gene

Function for GTF2IRD1P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GTF2IRD1P1 Gene

Localization for GTF2IRD1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GTF2IRD1P1 Gene

Pathways & Interactions for GTF2IRD1P1 Gene

PathCards logo

SuperPathways for GTF2IRD1P1 Gene

No Data Available

Interacting Proteins for GTF2IRD1P1 Gene

Gene Ontology (GO) - Biological Process for GTF2IRD1P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GTF2IRD1P1 Gene

Drugs & Compounds for GTF2IRD1P1 Gene

No Compound Related Data Available

Transcripts for GTF2IRD1P1 Gene

mRNA/cDNA for GTF2IRD1P1 Gene

(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Unigene Clusters for GTF2IRD1P1 Gene

GTF2I repeat domain containing 1 pseusogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for GTF2IRD1P1 Gene

No ASD Table

Relevant External Links for GTF2IRD1P1 Gene

GeneLoc Exon Structure for
GTF2IRD1P1
ECgene alternative splicing isoforms for
GTF2IRD1P1

Expression for GTF2IRD1P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GTF2IRD1P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of GTF2IRD1P1 Gene:

GTF2IRD1P1

SOURCE GeneReport for Unigene cluster for GTF2IRD1P1 Gene:

Hs.709878
genes like me logo Genes that share expression patterns with GTF2IRD1P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GTF2IRD1P1 Gene

Orthologs for GTF2IRD1P1 Gene

Evolution for GTF2IRD1P1 Gene

ENSEMBL:
Gene Tree for GTF2IRD1P1 (if available)
TreeFam:
Gene Tree for GTF2IRD1P1 (if available)

No data available for Orthologs for GTF2IRD1P1 Gene

Paralogs for GTF2IRD1P1 Gene

No data available for Paralogs for GTF2IRD1P1 Gene

Variants for GTF2IRD1P1 Gene

Sequence variations from dbSNP and Humsavar for GTF2IRD1P1 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000074668 -- 66,844,553(-) G/A intron_variant
rs1000091270 -- 66,814,375(-) G/A intron_variant
rs1000146758 -- 66,810,710(-) G/A non_coding_transcript_variant
rs1000152043 -- 66,813,862(-) A/G intron_variant
rs1000211645 -- 66,810,850(-) GGG/GGGGG non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for GTF2IRD1P1 Gene

Variant ID Type Subtype PubMed ID
esv1003570 CNV deletion 20482838
esv3571891 CNV loss 25503493
esv3613520 CNV gain 21293372
esv3613521 CNV gain 21293372
esv3613523 CNV loss 21293372
esv3891136 CNV gain 25118596
nsv981513 CNV duplication 23825009

Additional Variant Information for GTF2IRD1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GTF2IRD1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GTF2IRD1P1 Gene

Disorders for GTF2IRD1P1 Gene

Additional Disease Information for GTF2IRD1P1

No disorders were found for GTF2IRD1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GTF2IRD1P1 Gene

Publications for GTF2IRD1P1 Gene

  1. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer SW … Tsui LC (Science (New York, N.Y.) 2003) 3 58
  4. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 58

Products for GTF2IRD1P1 Gene

Sources for GTF2IRD1P1 Gene

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