Aliases for GTF2IP4 Gene

Aliases for GTF2IP4 Gene

  • General Transcription Factor IIi Pseudogene 4 2 3 5
  • General Transcription Factor II, I, Pseudogene 3
  • GTF2I 3

External Ids for GTF2IP4 Gene

Previous GeneCards Identifiers for GTF2IP4 Gene

  • GC07P073162

Summaries for GTF2IP4 Gene

GeneCards Summary for GTF2IP4 Gene

GTF2IP4 (General Transcription Factor IIi Pseudogene 4) is a Pseudogene.

Additional gene information for GTF2IP4 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GTF2IP4 Gene

Genomics for GTF2IP4 Gene

GeneHancer (GH) Regulatory Elements for GTF2IP4 Gene

Promoters and enhancers for GTF2IP4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J073154 Promoter 0.6 Ensembl 750.6 +0.9 877 4 PRDM10 ZSCAN4 NCOR1 ZNF398 GTF2IP4 RF00017-6299 piR-37134-001
GH07J073153 Enhancer 0.2 Ensembl 750.6 -1.9 -1924 0.8 GTF2IP4 RF00017-6299 piR-54126-001
GH07J072878 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 7.8 -275.1 -275144 2.8 ZBTB40 CTCF MLX RBPJ MYC L3MBTL2 MAX MNT POLR2A ZNF652 POM121 STAG3L3 TYW1B POM121B BAZ1B GTF2IRD2P1 NSUN5P2 BUD23 GTF2IP4 SBDSP1
GH07J072827 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 6.2 -325.6 -325618 4.6 SP1 ZBTB40 CTCF SIX5 ZBTB6 SMARCE1 POLR2A CTBP1 CREB1 HCFC1 TYW1B SBDSP1 lnc-POM121-2 lnc-TYW1B-6 piR-43921-002 piR-57460-623 STAG3L3 POM121 POM121B NSUN5P2
GH07J073420 Enhancer 1.1 Ensembl ENCODE 10.4 +265.4 265440 1 ZNF785 ZBTB40 RBPJ L3MBTL2 MNT GTF2F1 ELF3 MAFK MLLT1 TFE3 lnc-FZD9-1 STAG3L3 MIR590 POM121B BAZ1B POM121 NSUN5P2 GTF2IRD2P1 NSUN5 GTF2IP4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GTF2IP4 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GTF2IP4 Gene

Genomic Locations for GTF2IP4 Gene
chr7:73,154,924-73,207,296
(GRCh38/hg38)
Size:
52,373 bases
Orientation:
Plus strand
chr7:72,569,012-72,621,336
(GRCh37/hg19)
Size:
52,325 bases
Orientation:
Plus strand

Genomic View for GTF2IP4 Gene

Genes around GTF2IP4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GTF2IP4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GTF2IP4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GTF2IP4 Gene

Proteins for GTF2IP4 Gene

Post-translational modifications for GTF2IP4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GTF2IP4 Gene

Domains & Families for GTF2IP4 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GTF2IP4 Gene

Function for GTF2IP4 Gene

Phenotypes From GWAS Catalog for GTF2IP4 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GTF2IP4 Gene

Localization for GTF2IP4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GTF2IP4 Gene

Pathways & Interactions for GTF2IP4 Gene

PathCards logo

SuperPathways for GTF2IP4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for GTF2IP4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GTF2IP4 Gene

Drugs & Compounds for GTF2IP4 Gene

No Compound Related Data Available

Transcripts for GTF2IP4 Gene

mRNA/cDNA for GTF2IP4 Gene

(18) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for GTF2IP4 Gene

No ASD Table

Relevant External Links for GTF2IP4 Gene

GeneLoc Exon Structure for
GTF2IP4
ECgene alternative splicing isoforms for
GTF2IP4

Expression for GTF2IP4 Gene

NURSA nuclear receptor signaling pathways regulating expression of GTF2IP4 Gene:

GTF2IP4
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GTF2IP4 Gene

Orthologs for GTF2IP4 Gene

Evolution for GTF2IP4 Gene

ENSEMBL:
Gene Tree for GTF2IP4 (if available)
TreeFam:
Gene Tree for GTF2IP4 (if available)

No data available for Orthologs for GTF2IP4 Gene

Paralogs for GTF2IP4 Gene

No data available for Paralogs for GTF2IP4 Gene

Variants for GTF2IP4 Gene

Sequence variations from dbSNP and Humsavar for GTF2IP4 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs10591918 -- 73,172,036(+) TTTTTTTTTT/TTTTTTTTT/TTTTTTTTTTT/TTTTTTTTTTTT intron_variant
rs111226526 -- 73,194,421(+) A/G intron_variant
rs111333827 -- 73,166,649(+) A/G intron_variant
rs111370690 -- 73,200,282(+) A/T intron_variant
rs111400447 -- 73,192,556(+) G/C splice_donor_variant

Structural Variations from Database of Genomic Variants (DGV) for GTF2IP4 Gene

Variant ID Type Subtype PubMed ID
esv2759537 CNV gain+loss 17122850
esv2764061 CNV gain+loss 21179565
esv3362186 CNV duplication 20981092
esv34349 CNV gain 17911159
esv3613678 CNV loss 21293372
nsv1023115 CNV gain 25217958
nsv1029162 CNV loss 25217958
nsv1074517 CNV deletion 25765185
nsv1161563 CNV deletion 26073780
nsv428171 CNV gain 18775914
nsv520573 CNV gain+loss 19592680
nsv8137 CNV gain 18304495
nsv8138 CNV loss 18304495
nsv831025 CNV loss 17160897
nsv831027 CNV loss 17160897
nsv950547 CNV deletion 24416366
nsv970529 CNV duplication 23825009
nsv970530 CNV duplication 23825009
nsv971392 CNV duplication 23825009
nsv971393 CNV duplication 23825009
nsv981524 CNV duplication 23825009
nsv981525 CNV duplication 23825009
nsv981526 CNV duplication 23825009

Additional Variant Information for GTF2IP4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GTF2IP4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GTF2IP4 Gene

Disorders for GTF2IP4 Gene

Additional Disease Information for GTF2IP4

No disorders were found for GTF2IP4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GTF2IP4 Gene

Publications for GTF2IP4 Gene

  1. Transcriptional fates of human-specific segmental duplications in brain. (PMID: 30228200) Dougherty ML … Eichler EE (Genome research 2018) 3 56
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56
  4. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 56
  5. A duplicated gene in the breakpoint regions of the 7q11.23 Williams-Beuren syndrome deletion encodes the initiator binding protein TFII-I and BAP-135, a phosphorylation target of BTK. (PMID: 9466987) Pérez Jurado LA … Francke U (Human molecular genetics 1998) 3 56

Products for GTF2IP4 Gene

Sources for GTF2IP4 Gene