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Aliases for GTF2IP23 Gene

Aliases for GTF2IP23 Gene

  • General Transcription Factor IIi Pseudogene 23 2 3 5

External Ids for GTF2IP23 Gene

Previous GeneCards Identifiers for GTF2IP23 Gene

  • GC07P066880
  • GC07P066861
  • GC07P066853
  • GC07P066854
  • GC07P066855
  • GC07P066856
  • GC07P066857
  • GC07P066858
  • GC07P066859
  • GC07P066860

Summaries for GTF2IP23 Gene

GeneCards Summary for GTF2IP23 Gene

GTF2IP23 (General Transcription Factor IIi Pseudogene 23) is a Pseudogene.

Additional gene information for GTF2IP23 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GTF2IP23 Gene

Genomics for GTF2IP23 Gene

GeneHancer (GH) Regulatory Elements for GTF2IP23 Gene

Promoters and enhancers for GTF2IP23 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J066844 Promoter/Enhancer 1.6 Ensembl ENCODE 600.7 -0.8 -773 5.6 MTA3 CC2D1A SP1 ZFX ELF3 MNT SIX5 NKRF POLR2A MLLT1 GTF2IRD1P1 GTF2IP23 LINC02604 ENSG00000234500 ENSG00000229180 RABGEF1 TYW1 ENSG00000273448 TMEM248 LINC00174
GH07J066653 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.2 -192.2 -192225 3.9 MTA3 ZNF652 CC2D1A ZFX ELF3 MNT ZNF148 NKRF POLR2A MLLT1 ENSG00000226824 RABGEF1 LOC100996437 VKORC1L1 ENSG00000229180 ENSG00000244657 ENSG00000237310 ENSG00000230189 CRCP KCTD7
GH07J066739 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 10.3 -105.8 -105811 4.2 CC2D1A ZFX ELF3 MNT NKRF POLR2A MLLT1 ZNF121 CEBPG GTF2F1 RABGEF1 GC07P066740 ENSG00000272831 ENSG00000226824 ENSG00000244657 ENSG00000234500 ENSG00000229180 ENSG00000232546 GUSB ENSG00000230189
GH07J066680 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 10.2 -164.5 -164455 3.8 MTA3 ZFX MNT NKRF POLR2A MLLT1 ZNF121 ZNF687 ZSCAN21 AHR RABGEF1 GC07M066672 ENSG00000226824 VKORC1L1 ENSG00000244657 ENSG00000234500 ENSG00000229180 ENSG00000232546 GUSB ENSG00000230189
GH07J065980 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.1 -865.5 -865466 2.9 SP1 ZFX ELF3 MNT SIX5 NKRF POLR2A ZNF121 CEBPG GTF2F1 GUSB ENSG00000234500 ENSG00000229180 CCT6P1 CCT6P3 RABGEF1 ENSG00000244657 ENSG00000232546 ENSG00000230189 ENSG00000236529
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GTF2IP23 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GTF2IP23 Gene

Genomic Locations for GTF2IP23 Gene
chr7:66,847,163-66,896,593
(GRCh38/hg38)
Size:
49,431 bases
Orientation:
Plus strand

Genomic View for GTF2IP23 Gene

Genes around GTF2IP23 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GTF2IP23 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GTF2IP23 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GTF2IP23 Gene

Proteins for GTF2IP23 Gene

Post-translational modifications for GTF2IP23 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GTF2IP23 Gene

Domains & Families for GTF2IP23 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GTF2IP23 Gene

Function for GTF2IP23 Gene

Phenotypes From GWAS Catalog for GTF2IP23 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GTF2IP23 Gene

Localization for GTF2IP23 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GTF2IP23 Gene

Pathways & Interactions for GTF2IP23 Gene

PathCards logo

SuperPathways for GTF2IP23 Gene

No Data Available

Interacting Proteins for GTF2IP23 Gene

Gene Ontology (GO) - Biological Process for GTF2IP23 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GTF2IP23 Gene

Drugs & Compounds for GTF2IP23 Gene

No Compound Related Data Available

Transcripts for GTF2IP23 Gene

mRNA/cDNA for GTF2IP23 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for GTF2IP23 Gene

No ASD Table

Relevant External Links for GTF2IP23 Gene

GeneLoc Exon Structure for
GTF2IP23
ECgene alternative splicing isoforms for
GTF2IP23

Expression for GTF2IP23 Gene

NURSA nuclear receptor signaling pathways regulating expression of GTF2IP23 Gene:

GTF2IP23
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GTF2IP23 Gene

Orthologs for GTF2IP23 Gene

Evolution for GTF2IP23 Gene

ENSEMBL:
Gene Tree for GTF2IP23 (if available)
TreeFam:
Gene Tree for GTF2IP23 (if available)

No data available for Orthologs for GTF2IP23 Gene

Paralogs for GTF2IP23 Gene

No data available for Paralogs for GTF2IP23 Gene

Variants for GTF2IP23 Gene

Sequence variations from dbSNP and Humsavar for GTF2IP23 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000330482 -- 66,856,406(+) C/G intron_variant
rs1000435452 -- 66,856,002(+) T/G intron_variant
rs1000656866 -- 66,854,552(+) G/T intron_variant
rs1000667170 -- 66,849,627(+) C/G intron_variant
rs1000771544 -- 66,854,204(+) T/C intron_variant

Additional Variant Information for GTF2IP23 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GTF2IP23

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GTF2IP23 Gene

Disorders for GTF2IP23 Gene

Additional Disease Information for GTF2IP23

No disorders were found for GTF2IP23 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GTF2IP23 Gene

Publications for GTF2IP23 Gene

No publications were found for GTF2IP23 Gene.

No data available for External Links for GTF2IP23 Gene

Products for GTF2IP23 Gene

Sources for GTF2IP23 Gene

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