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Aliases for GTF2IP20 Gene

Aliases for GTF2IP20 Gene

  • General Transcription Factor IIi Pseudogene 20 2 3 5

External Ids for GTF2IP20 Gene

Previous GeneCards Identifiers for GTF2IP20 Gene

  • GC01M223985

Summaries for GTF2IP20 Gene

GeneCards Summary for GTF2IP20 Gene

GTF2IP20 (General Transcription Factor IIi Pseudogene 20) is a Pseudogene.

Additional gene information for GTF2IP20 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GTF2IP20 Gene

Genomics for GTF2IP20 Gene

GeneHancer (GH) Regulatory Elements for GTF2IP20 Gene

Promoters and enhancers for GTF2IP20 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J223991 Promoter/Enhancer 1.6 Ensembl ENCODE 627.5 -0.6 -557 3.6 HDGF MTA3 SP1 CC2D1A ELF3 MNT MLLT1 CEBPG CSDE1 ZNF687 GTF2IP20 ENSG00000185495 ENSG00000278467 NVL CICP5 WDR26 CAPN2
GH01J223710 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.9 +273.1 273129 18.2 SP1 ZFX CC2D1A CBFA2T2 ZNF148 NKRF MLLT1 ZNF121 CEBPG RERE CAPN2 NVL CICP5 ENSG00000185495 TP53BP2 WDR26 CAPN8 GTF2IP20 FBXO28 RNU6-1248P
GH01J224622 Enhancer 1.5 FANTOM5 ENCODE dbSUPER 19.8 -631.1 -631108 2.6 ZSCAN21 BACH1 MAFK SP7 ZNF548 KLF14 PRDM1 ZNF404 MZF1 CREB1 NVL CICP5 ENSG00000185495 GTF2IP20 CAPN2 WDR26 CNIH3 ENSG00000229400 LOC102723817 ENSG00000234247
GH01J224429 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.4 -440.9 -440864 7.2 HDGF ELF3 ZFX ZKSCAN8 MNT ZNF148 NKRF POLR2A MLLT1 ZNF121 WDR26 CNIH3 CNIH4 NVL CICP5 GTF2IP20 GC01P224430
GH01J223844 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 8 +147.7 147721 5 CC2D1A CTCF ZFX ZNF148 NKRF MLLT1 ZNF121 GTF2F1 CSDE1 ZNF384 TP53BP2 GC01P223846 GC01P223847 CICP5 NVL ENSG00000185495 CAPN2 FBXO28 WDR26 CNIH4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GTF2IP20 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GTF2IP20 Gene

Genomic Locations for GTF2IP20 Gene
chr1:223,951,394-223,992,644
(GRCh38/hg38)
Size:
41,251 bases
Orientation:
Minus strand
chr1:224,138,968-224,141,141
(GRCh37/hg19)
Size:
2,174 bases
Orientation:
Minus strand

Genomic View for GTF2IP20 Gene

Genes around GTF2IP20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GTF2IP20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GTF2IP20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GTF2IP20 Gene

Proteins for GTF2IP20 Gene

Post-translational modifications for GTF2IP20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GTF2IP20 Gene

Domains & Families for GTF2IP20 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GTF2IP20 Gene

Function for GTF2IP20 Gene

Phenotypes From GWAS Catalog for GTF2IP20 Gene

Phenotypes for GTF2IP20 Gene

genes like me logo Genes that share phenotypes with GTF2IP20: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GTF2IP20 Gene

Localization for GTF2IP20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GTF2IP20 Gene

Pathways & Interactions for GTF2IP20 Gene

PathCards logo

SuperPathways for GTF2IP20 Gene

No Data Available

Interacting Proteins for GTF2IP20 Gene

Gene Ontology (GO) - Biological Process for GTF2IP20 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GTF2IP20 Gene

Drugs & Compounds for GTF2IP20 Gene

No Compound Related Data Available

Transcripts for GTF2IP20 Gene

mRNA/cDNA for GTF2IP20 Gene

(12) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for GTF2IP20 Gene

No ASD Table

Relevant External Links for GTF2IP20 Gene

GeneLoc Exon Structure for
GTF2IP20
ECgene alternative splicing isoforms for
GTF2IP20

Expression for GTF2IP20 Gene

NURSA nuclear receptor signaling pathways regulating expression of GTF2IP20 Gene:

GTF2IP20
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GTF2IP20 Gene

Orthologs for GTF2IP20 Gene

Evolution for GTF2IP20 Gene

ENSEMBL:
Gene Tree for GTF2IP20 (if available)
TreeFam:
Gene Tree for GTF2IP20 (if available)

No data available for Orthologs for GTF2IP20 Gene

Paralogs for GTF2IP20 Gene

No data available for Paralogs for GTF2IP20 Gene

Variants for GTF2IP20 Gene

Sequence variations from dbSNP and Humsavar for GTF2IP20 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000046966 -- 223,969,232(-) A/G intron_variant
rs1000142741 -- 223,969,773(-) G/A intron_variant
rs1000248245 -- 223,962,182(-) T/C intron_variant
rs1000321734 -- 223,975,145(-) A/C intron_variant
rs1000387051 -- 223,987,830(-) T/A intron_variant

Additional Variant Information for GTF2IP20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GTF2IP20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GTF2IP20 Gene

Disorders for GTF2IP20 Gene

Additional Disease Information for GTF2IP20

No disorders were found for GTF2IP20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GTF2IP20 Gene

Publications for GTF2IP20 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang AG … Kim NS (Biochemical and biophysical research communications 2006) 3 58
  3. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 58

Products for GTF2IP20 Gene

Sources for GTF2IP20 Gene

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