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Aliases for GTF2IP13 Gene

Aliases for GTF2IP13 Gene

  • General Transcription Factor IIi Pseudogene 13 2 3 5

External Ids for GTF2IP13 Gene

Summaries for GTF2IP13 Gene

GeneCards Summary for GTF2IP13 Gene

GTF2IP13 (General Transcription Factor IIi Pseudogene 13) is a Pseudogene.

Additional gene information for GTF2IP13 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GTF2IP13 Gene

Genomics for GTF2IP13 Gene

GeneHancer (GH) Regulatory Elements for GTF2IP13 Gene

Promoters and enhancers for GTF2IP13 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J045767 Promoter/Enhancer 1.5 Ensembl ENCODE 611.8 -0.4 -384 3.4 SP1 ELF3 NKRF POLR2A GTF2F1 CSDE1 ZNF687 MAFK TFE3 YY1 SEPTIN7P2 GTF2IP13 PIR55252 PURB CICP20 PIR48906 GC07M045767
GH07J045688 Enhancer 0.8 Ensembl ENCODE 17.8 -79.2 -79229 1.9 SP1 FOS YY1 GABPA TFAP4 HNF4A RXRA MAX REST GTF2IP13 GC07M045664 PIR38902 ADCY1
GH07J045709 Enhancer 0.5 Ensembl ENCODE 18.3 -59.3 -59296 1.4 NR2F2 GTF2IP13 PIR58599 GC07P045702 ADCY1
GH07J045685 Enhancer 0.4 Ensembl 16.8 -83.4 -83385 0.6 SCRT2 SCRT1 EGR2 GTF2IP13 GC07M045664 PIR38902 ADCY1
GH07J046281 Enhancer 1 Ensembl ENCODE 4.5 +514.0 514024 4.6 ZNF687 SP1 RELA IKZF1 CEBPG RXRA IKZF2 ATF7 CTBP1 FOXA2 GTF2IP13 ENSG00000237760 ENSG00000229459 GC07P046411
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GTF2IP13 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GTF2IP13 Gene

Genomic Locations for GTF2IP13 Gene
chr7:45,769,085-45,815,263
(GRCh38/hg38)
Size:
46,179 bases
Orientation:
Plus strand

Genomic View for GTF2IP13 Gene

Genes around GTF2IP13 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GTF2IP13 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GTF2IP13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GTF2IP13 Gene

Proteins for GTF2IP13 Gene

Post-translational modifications for GTF2IP13 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GTF2IP13 Gene

Domains & Families for GTF2IP13 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GTF2IP13 Gene

Function for GTF2IP13 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GTF2IP13 Gene

Localization for GTF2IP13 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GTF2IP13 Gene

Pathways & Interactions for GTF2IP13 Gene

PathCards logo

SuperPathways for GTF2IP13 Gene

No Data Available

Interacting Proteins for GTF2IP13 Gene

Gene Ontology (GO) - Biological Process for GTF2IP13 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GTF2IP13 Gene

Drugs & Compounds for GTF2IP13 Gene

No Compound Related Data Available

Transcripts for GTF2IP13 Gene

mRNA/cDNA for GTF2IP13 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for GTF2IP13 Gene

No ASD Table

Relevant External Links for GTF2IP13 Gene

GeneLoc Exon Structure for
GTF2IP13
ECgene alternative splicing isoforms for
GTF2IP13

Expression for GTF2IP13 Gene

NURSA nuclear receptor signaling pathways regulating expression of GTF2IP13 Gene:

GTF2IP13
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GTF2IP13 Gene

Orthologs for GTF2IP13 Gene

Evolution for GTF2IP13 Gene

ENSEMBL:
Gene Tree for GTF2IP13 (if available)
TreeFam:
Gene Tree for GTF2IP13 (if available)

No data available for Orthologs for GTF2IP13 Gene

Paralogs for GTF2IP13 Gene

No data available for Paralogs for GTF2IP13 Gene

Variants for GTF2IP13 Gene

Sequence variations from dbSNP and Humsavar for GTF2IP13 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000025577 -- 45,780,958(+) G/A genic_upstream_transcript_variant, intron_variant
rs1000073491 -- 45,793,280(+) T/C genic_downstream_transcript_variant, intron_variant
rs1000279866 -- 45,804,362(+) T/G downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant
rs1000332728 -- 45,804,027(+) A/T genic_downstream_transcript_variant, intron_variant
rs1000391068 -- 45,769,545(+) G/C/T genic_upstream_transcript_variant, intron_variant

Additional Variant Information for GTF2IP13 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GTF2IP13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GTF2IP13 Gene

Disorders for GTF2IP13 Gene

No disorders were found for GTF2IP13 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GTF2IP13 Gene

Publications for GTF2IP13 Gene

No publications were found for GTF2IP13 Gene.

No data available for External Links for GTF2IP13 Gene

Products for GTF2IP13 Gene

Sources for GTF2IP13 Gene

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