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Aliases for GTF2IP12 Gene

Aliases for GTF2IP12 Gene

  • General Transcription Factor IIi Pseudogene 12 2 3 5

External Ids for GTF2IP12 Gene

Previous GeneCards Identifiers for GTF2IP12 Gene

  • GC04M119441
  • GC04M119509
  • GC04M119445
  • GC04M119453
  • GC04M119461
  • GC04M119469
  • GC04M119477
  • GC04M119486
  • GC04M119495
  • GC04M119503

Summaries for GTF2IP12 Gene

GeneCards Summary for GTF2IP12 Gene

GTF2IP12 (General Transcription Factor IIi Pseudogene 12) is a Pseudogene.

Additional gene information for GTF2IP12 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GTF2IP12 Gene

Genomics for GTF2IP12 Gene

GeneHancer (GH) Regulatory Elements for GTF2IP12 Gene

Promoters and enhancers for GTF2IP12 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J119453 Promoter/Enhancer 1.6 Ensembl ENCODE 600.7 -0.5 -450 3 ZNF652 SP1 CC2D1A ZFX ELF3 MNT SIX5 NKRF POLR2A CEBPG ENSG00000245958 LOC645513 GTF2IP12 ENSG00000250950 SYNPO2 PDE5A METTL14 CICP16 ENSG00000260091 KLHL2P1
GH04J119451 Enhancer 0.2 Ensembl 0.7 +2.8 2750 0.2 ENSG00000245958 GTF2IP12 RNU6-1217P
GH04J119419 Enhancer 0.2 Ensembl 0.3 +34.6 34553 0.6 ENSG00000245958 LINC01061 RNU6-1217P GTF2IP12
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GTF2IP12 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GTF2IP12 Gene

Genomic Locations for GTF2IP12 Gene
chr4:119,405,523-119,454,651
(GRCh38/hg38)
Size:
49,129 bases
Orientation:
Minus strand

Genomic View for GTF2IP12 Gene

Genes around GTF2IP12 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GTF2IP12 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GTF2IP12 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GTF2IP12 Gene

Proteins for GTF2IP12 Gene

Post-translational modifications for GTF2IP12 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GTF2IP12 Gene

Domains & Families for GTF2IP12 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GTF2IP12 Gene

Function for GTF2IP12 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GTF2IP12 Gene

Localization for GTF2IP12 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GTF2IP12 Gene

Pathways & Interactions for GTF2IP12 Gene

PathCards logo

SuperPathways for GTF2IP12 Gene

No Data Available

Interacting Proteins for GTF2IP12 Gene

Gene Ontology (GO) - Biological Process for GTF2IP12 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GTF2IP12 Gene

Drugs & Compounds for GTF2IP12 Gene

No Compound Related Data Available

Transcripts for GTF2IP12 Gene

mRNA/cDNA for GTF2IP12 Gene

(1) Additional mRNA sequences :
(8) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for GTF2IP12 Gene

No ASD Table

Relevant External Links for GTF2IP12 Gene

GeneLoc Exon Structure for
GTF2IP12
ECgene alternative splicing isoforms for
GTF2IP12

Expression for GTF2IP12 Gene

NURSA nuclear receptor signaling pathways regulating expression of GTF2IP12 Gene:

GTF2IP12
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GTF2IP12 Gene

Orthologs for GTF2IP12 Gene

Evolution for GTF2IP12 Gene

ENSEMBL:
Gene Tree for GTF2IP12 (if available)
TreeFam:
Gene Tree for GTF2IP12 (if available)

No data available for Orthologs for GTF2IP12 Gene

Paralogs for GTF2IP12 Gene

No data available for Paralogs for GTF2IP12 Gene

Variants for GTF2IP12 Gene

Sequence variations from dbSNP and Humsavar for GTF2IP12 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1001372108 -- 119,449,340(-) C/G/T downstream_transcript_variant
rs1001520702 -- 119,454,579(-) C/T non_coding_transcript_variant
rs1002532001 -- 119,455,563(-) G/C upstream_transcript_variant
rs10027431 -- 119,450,987(-) A/G intron_variant
rs10027432 -- 119,450,988(-) A/C/T intron_variant

Additional Variant Information for GTF2IP12 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GTF2IP12

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GTF2IP12 Gene

Disorders for GTF2IP12 Gene

Additional Disease Information for GTF2IP12

No disorders were found for GTF2IP12 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GTF2IP12 Gene

Publications for GTF2IP12 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for GTF2IP12 Gene

Sources for GTF2IP12 Gene

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