GSG1L2 Gene (Protein Coding)

GSG1 Like 2

GC17M009801
GIFtS:
17

Aliases for GSG1L2 Gene

Aliases for GSG1L2 Gene

  • GSG1 Like 2 2 3 5
  • Germ Cell-Specific Gene 1-Like Protein 2 3 4
  • GSG1-Like Protein 2 3 4
  • Putative Germ Cell-Specific Gene 1-Like Protein 2 3
  • Germ Cell-Specific Gene 1-Like Protein 2-Like 3

External Ids for GSG1L2 Gene

Summaries for GSG1L2 Gene

GeneCards Summary for GSG1L2 Gene

GSG1L2 (GSG1 Like 2) is a Protein Coding gene. An important paralog of this gene is GSG1L.

Additional gene information for GSG1L2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GSG1L2 Gene

Genomics for GSG1L2 Gene

GeneHancer (GH) Regulatory Elements for GSG1L2 Gene

Promoters and enhancers for GSG1L2 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J009819 Enhancer 0.4 dbSUPER 500.7 +1.3 1332 1.9 TRIM28 RBM25 JUND FOS ZNF394 GLP2R GSG1L2 ENSG00000278944
GH17J009816 Enhancer 0.6 FANTOM5 0.7 +5.0 4961 0.3 CREB1 RFX5 MYC NFYA NFYB USF2 JUND CREM NFYC SP1 GAS7 GSG1L2 ENSG00000278944
GH17J009801 Enhancer 0.9 ENCODE dbSUPER 0.4 +19.7 19670 2.4 ZNF217 TCF12 POLR2A RFX1 EP300 SIN3A SMARCC1 CTCF FOS FOSL2 ENSG00000283025 ENSG00000278944 piR-43106-090 GSG1L2 ENSG00000282882
GH17J009820 Enhancer 0.3 Ensembl 0.7 +2.9 2870 0.4 MAFK FOS GSG1L2 ENSG00000278944
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GSG1L2 on UCSC Golden Path with GeneCards custom track

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for GSG1L2

Genomic Locations for GSG1L2 Gene

Genomic Locations for GSG1L2 Gene
chr17:9,801,473-9,822,071
(GRCh38/hg38)
Size:
20,599 bases
Orientation:
Minus strand

Genomic View for GSG1L2 Gene

Genes around GSG1L2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GSG1L2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GSG1L2 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for GSG1L2 Gene

Proteins for GSG1L2 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for GSG1L2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8MUP6-GS1L2_HUMAN
    Recommended name:
    Germ cell-specific gene 1-like protein 2
    Protein Accession:
    A8MUP6
    Secondary Accessions:
    • K7EL98

    Protein attributes for GSG1L2 Gene

    Size:
    293 amino acids
    Molecular mass:
    32443 Da
    Quaternary structure:
    No Data Available

neXtProt entry for GSG1L2 Gene

Post-translational modifications for GSG1L2 Gene

  • Glycosylation at Asn59 and Asn67

Other Protein References for GSG1L2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for GSG1L2 Gene

Domains & Families for GSG1L2 Gene

Gene Families for GSG1L2 Gene

Human Protein Atlas (HPA):
  • Predicted membrane proteins

Protein Domains for GSG1L2 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

A8MUP6

UniProtKB/Swiss-Prot:

GS1L2_HUMAN :
  • Belongs to the GSG1 family.
Family:
  • Belongs to the GSG1 family.
genes like me logo Genes that share domains with GSG1L2: view

No data available for Suggested Antigen Peptide Sequences for GSG1L2 Gene

Function for GSG1L2 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for GSG1L2 Gene

Phenotypes for GSG1L2 Gene

GenomeRNAi human phenotypes for GSG1L2:
genes like me logo Genes that share phenotypes with GSG1L2: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GSG1L2 Gene

Localization for GSG1L2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for GSG1L2 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for GSG1L2 gene
Compartment Confidence
plasma membrane 4
extracellular 1

Gene Ontology (GO) - Cellular Components for GSG1L2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IBA 21873635
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with GSG1L2: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for GSG1L2 Gene

Pathways & Interactions for GSG1L2 Gene

PathCards logo

SuperPathways for GSG1L2 Gene

No Data Available

Interacting Proteins for GSG1L2 Gene

;

Gene Ontology (GO) - Biological Process for GSG1L2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GSG1L2 Gene

Drugs & Compounds for GSG1L2 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for GSG1L2 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for GSG1L2 Gene

1 REFSEQ mRNAs :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for GSG1L2 Gene

No ASD Table

Relevant External Links for GSG1L2 Gene

GeneLoc Exon Structure for
GSG1L2

Expression for GSG1L2 Gene

Products:

  1. Primer
  2. Gene Expression Assay

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GSG1L2 Gene

Orthologs for GSG1L2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for GSG1L2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia -- 31
  • 91 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia LOC101904437 30
  • 80.84 (n)
-- 31
  • 73 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Gm12302 31 30
  • 75.98 (n)
 OneToOne
Gsg1l2 17
platypus
(Ornithorhynchus anatinus)
 Mammalia -- 31
  • 37 (a)
 OneToOne
chicken
(Gallus gallus)
 Aves -- 31
  • 43 (a)
 OneToOne
lizard
(Anolis carolinensis)
 Reptilia -- 31
  • 45 (a)
 OneToOne
tropical clawed frog
(Silurana tropicalis)
 Amphibia LOC100495852 30
  • 62.83 (n)
zebrafish
(Danio rerio)
 Actinopterygii si:ch211-138k19.2 31
  • 40 (a)
 OneToMany
gb:dt867253 31
  • 36 (a)
 OneToMany
CR812464.1 31
  • 33 (a)
 OneToMany
Species where no ortholog for GSG1L2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for GSG1L2 Gene

ENSEMBL:
Gene Tree for GSG1L2 (if available)
TreeFam:
Gene Tree for GSG1L2 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for GSG1L2: view image

Paralogs for GSG1L2 Gene

Paralogs for GSG1L2 Gene

Pseudogenes.org Pseudogenes for GSG1L2 Gene

genes like me logo Genes that share paralogs with GSG1L2: view

Variants for GSG1L2 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for GSG1L2 Gene

Additional Variant Information for GSG1L2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GSG1L2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GSG1L2 Gene

Disorders for GSG1L2 Gene

Additional Disease Information for GSG1L2

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for GSG1L2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GSG1L2 Gene

Publications for GSG1L2 Gene

  1. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody MC … Nusbaum C (Nature 2006) 3 4 54
  2. A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis. (PMID: 23509962) Greliche N … Trégouët DA (BMC medical genetics 2013) 3 54
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3 54
  4. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 54

ExternalLinks

View latest publications for GSG1L2 gene in Mastermind

Products for GSG1L2 Gene

Sources for GSG1L2 Gene