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Aliases for GSEC Gene

Subcategory (RNA class) for GSEC Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for GSEC Gene

  • G-Quadruplex Forming Sequence Containing LncRNA 2 3 5
  • ST3GAL4 Antisense RNA 1 (Head To Head) 2 3
  • ST3GAL4-AS1 3
  • DCPS-AS1 3

External Ids for GSEC Gene

Previous HGNC Symbols for GSEC Gene

  • ST3GAL4-AS1

Summaries for GSEC Gene

GeneCards Summary for GSEC Gene

GSEC (G-Quadruplex Forming Sequence Containing LncRNA) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with GSEC include Colorectal Cancer and Al-Raqad Syndrome.

Additional gene information for GSEC Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GSEC Gene

Genomics for GSEC Gene

GeneHancer (GH) Regulatory Elements for GSEC Gene

Promoters and enhancers for GSEC Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J126350 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 600.7 -0.5 -493 11.5 ZFX CC2D1A ZNF148 POLR2A MLLT1 GTF2F1 CSDE1 CDC5L BACH1 MCM2 ST3GAL4 GSEC ENSG00000255062 TIRAP STT3A FOXRED1 DCPS FAM118B ENSG00000278215
GH11J126339 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +10.9 10875 11 CC2D1A CBFA2T2 MLLT1 GTF2F1 BACH1 MAFK TRIM24 EGR1 ZNF639 SMARCA4 DCPS FOXRED1 TIRAP FAM118B STT3A ENSG00000255062 ST3GAL4 GC11P126349 PIR55528 GSEC
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GSEC on UCSC Golden Path with GeneCards custom track

Genomic Locations for GSEC Gene

Genomic Locations for GSEC Gene
chr11:126,340,889-126,355,587
(GRCh38/hg38)
Size:
14,699 bases
Orientation:
Minus strand
chr11:126,211,611-126,225,482
(GRCh37/hg19)
Size:
13,872 bases
Orientation:
Minus strand

Genomic View for GSEC Gene

Genes around GSEC on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GSEC Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GSEC Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GSEC Gene

Proteins for GSEC Gene

No data available for DME Specific Peptides for GSEC Gene

Domains & Families for GSEC Gene

Gene Families for GSEC Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with GSEC: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GSEC Gene

Function for GSEC Gene

Phenotypes From GWAS Catalog for GSEC Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GSEC Gene

Localization for GSEC Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GSEC Gene

Pathways & Interactions for GSEC Gene

PathCards logo

SuperPathways for GSEC Gene

No Data Available

Interacting Proteins for GSEC Gene

Gene Ontology (GO) - Biological Process for GSEC Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GSEC Gene

Drugs & Compounds for GSEC Gene

No Compound Related Data Available

Transcripts for GSEC Gene

mRNA/cDNA for GSEC Gene

(3) Additional mRNA sequences :
(51) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for GSEC Gene

No ASD Table

Relevant External Links for GSEC Gene

GeneLoc Exon Structure for
GSEC
ECgene alternative splicing isoforms for
GSEC

Expression for GSEC Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GSEC Gene

Orthologs for GSEC Gene

Evolution for GSEC Gene

ENSEMBL:
Gene Tree for GSEC (if available)
TreeFam:
Gene Tree for GSEC (if available)

No data available for Orthologs for GSEC Gene

Paralogs for GSEC Gene

No data available for Paralogs for GSEC Gene

Variants for GSEC Gene

Sequence variations from dbSNP and Humsavar for GSEC Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs137941190 pathogenic, AL-RAQAD SYNDROME 126,345,546(-) C/G/T intron_variant
rs35836343 likely-benign, not provided 126,343,347(-) G/A intron_variant
rs140377449 uncertain-significance, not provided 126,345,390(-) G/A/T intron_variant
rs146794173 uncertain-significance, not specified 126,345,368(-) C/A/G/T intron_variant
rs1000014616 -- 126,347,525(-) C/G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GSEC Gene

Variant ID Type Subtype PubMed ID
nsv556530 CNV loss 21841781
nsv826123 CNV gain 20364138

Additional Variant Information for GSEC Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GSEC

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GSEC Gene

Disorders for GSEC Gene

MalaCards: The human disease database

(2) MalaCards diseases for GSEC Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
colorectal cancer
  • crc
al-raqad syndrome
  • ars
- elite association - COSMIC cancer census association via MalaCards
Search GSEC in MalaCards View complete list of genes associated with diseases

Additional Disease Information for GSEC

genes like me logo Genes that share disorders with GSEC: view

No data available for UniProtKB/Swiss-Prot and Genatlas for GSEC Gene

Publications for GSEC Gene

  1. The novel G-quadruplex-containing long non-coding RNA GSEC antagonizes DHX36 and modulates colon cancer cell migration. (PMID: 27797375) Matsumura K … Akiyama T (Oncogene 2017) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for GSEC Gene

Sources for GSEC Gene

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