GS1-600G8.3 Gene (RNA Gene)

Unknown Transcript

GC0XP013310
GIFtS:
9
See more...

Aliases for GS1-600G8.3 Gene

Data sources for GS1-600G8.3 Gene:

Subcategory (RNA class) for GS1-600G8.3 Gene

lncRNA

Aliases for GS1-600G8.3 Gene

External Ids for GS1-600G8.3 Gene

Previous GeneCards Identifiers for GS1-600G8.3 Gene

  • GC0XP013331

Summaries for GS1-600G8.3 Gene

GeneCards Summary for GS1-600G8.3 Gene

GS1-600G8.3 (Unknown Transcript) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with GS1-600G8.3 include Monkeypox.

Additional gene information for GS1-600G8.3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GS1-600G8.3 Gene

Genomics for GS1-600G8.3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for GS1-600G8.3 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH0XJ013303 Promoter/Enhancer 0.8 EPDnew Ensembl 0.4 -5.7 -5651 3.6 FOSL1 SPI1 POLR2A SOX6 MNT LINC02154 HSALNG0136704 GS1-600G8.3 ATXN3L lnc-ATXN3L-4 RF00017-8162 FAM9C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GS1-600G8.3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for GS1-600G8.3 Gene

Latest Assembly
chrX:13,310,652-13,319,934
(GRCh38/hg38)
Size:
9,283 bases
Orientation:
Plus strand

Previous Assembly
chrX:13,328,771-13,338,052
(GRCh37/hg19 by Entrez Gene)
Size:
9,282 bases
Orientation:
Plus strand

chrX:13,328,771-13,338,052
(GRCh37/hg19 by Ensembl)
Size:
9,282 bases
Orientation:
Plus strand

Genomic View for GS1-600G8.3 Gene

Genes around GS1-600G8.3 on UCSC Golden Path with GeneCards custom track
GS1-600G8.3 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
GS1-600G8.3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GS1-600G8.3 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for GS1-600G8.3 Gene

Proteins for GS1-600G8.3 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for GS1-600G8.3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GS1-600G8.3 Gene

Domains & Families for GS1-600G8.3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GS1-600G8.3 Gene

Function for GS1-600G8.3 Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GS1-600G8.3 Gene

Localization for GS1-600G8.3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GS1-600G8.3 Gene

Pathways & Interactions for GS1-600G8.3 Gene

PathCards logo

SuperPathways for GS1-600G8.3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for GS1-600G8.3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for GS1-600G8.3 Gene

Drugs & Compounds for GS1-600G8.3 Gene

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  1. Drug products for research
No Compound Related Data Available

Transcripts for GS1-600G8.3 Gene

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  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for GS1-600G8.3 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000169804_9606 lncRNA 2249 4

RefSeq: NR_046087,

Ensembl: ENST00000431486 (view in UCSC) ,

LncBook: HSALNT0280321,

NONCODE: NONHSAT136294.2,

URS00009BAD33_9606 lncRNA 2388 2

LncBook: HSALNT0280322,

NONCODE: NONHSAT222508.1,

URS0001BDAB5D_9606 lncRNA 8565 1

LncBook: HSALNT0280319,

URS0001BEA6BB_9606 lncRNA 8352 1

LncBook: HSALNT0280318,

URS0001BE76EF_9606 lncRNA 4217 1

LncBook: HSALNT0280324,

GS1-600G8.3 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for GS1-600G8.3 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for GS1-600G8.3 Gene

No ASD Table

Relevant External Links for GS1-600G8.3 Gene

GeneLoc Exon Structure for
GS1-600G8.3

Expression for GS1-600G8.3 Gene

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  1. Primer products for research
  2. Gene Expression Assays for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for GS1-600G8.3 Gene

mRNA expression in normal human tissues for GS1-600G8.3 Gene
mRNA expression by GTEx for GS1-600G8.3 GenemRNA expression by BioGPS for GS1-600G8.3 Gene

mRNA differential expression in normal tissues according to GTEx for GS1-600G8.3 Gene

This gene is overexpressed in Testis (x50.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for GS1-600G8.3

genes like me logo Genes that share expression patterns with GS1-600G8.3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GS1-600G8.3 Gene

Orthologs for GS1-600G8.3 Gene

Evolution for GS1-600G8.3 Gene

ENSEMBL:
Gene Tree for GS1-600G8.3 (if available)
TreeFam:
Gene Tree for GS1-600G8.3 (if available)

No data available for Orthologs for GS1-600G8.3 Gene

Paralogs for GS1-600G8.3 Gene

No data available for Paralogs for GS1-600G8.3 Gene

Variants for GS1-600G8.3 Gene

Products:

  1. SNP Genotyping and Copy Number Assays for research

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for GS1-600G8.3 Gene

SNP ID Clinical significance and condition Chr 0X pos Variation AA Info Type
973116 Likely Benign: Intellectual disability 13,319,070(+) T/A
NM_001135995.1(ATXN3L):c.865A>T (p.Lys289Ter) 		NONSENSE,NON_CODING_TRANSCRIPT

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for GS1-600G8.3 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for GS1-600G8.3 Gene

Variant ID Type Subtype PubMed ID
esv3576773 CNV gain 25503493

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for GS1-600G8.3 Gene

Disorders for GS1-600G8.3 Gene

MalaCards: The human disease database

(1) MalaCards diseases for GS1-600G8.3 Gene - From: COP

Disorder Aliases PubMed IDs
monkeypox
  • monkeypox virus infection
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for GS1-600G8.3

Open Targets Platform
Open Targets Platform
genes like me logo Genes that share disorders with GS1-600G8.3: view

No data available for UniProtKB/Swiss-Prot and Genatlas for GS1-600G8.3 Gene

Publications for GS1-600G8.3 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for GS1-600G8.3 Gene

Products for GS1-600G8.3 Gene

Sources for GS1-600G8.3 Gene