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GS1-600G8.3 Gene(RNA Gene)

Unknown Transcript

GCID:
GC0XP013310
GIFtS:
9
Genes Participants
UDN Logo

Aliases for GS1-600G8.3 Gene

Subcategory (RNA class) for GS1-600G8.3 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for GS1-600G8.3 Gene

  • Unknown Transcript 3
  • Novel Transcript 5
  • AC004674.1 5

External Ids for GS1-600G8.3 Gene

Previous GeneCards Identifiers for GS1-600G8.3 Gene

  • GC0XP013331

Summaries for GS1-600G8.3 Gene

GeneCards Summary for GS1-600G8.3 Gene

GS1-600G8.3 (Unknown Transcript) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for GS1-600G8.3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GS1-600G8.3 Gene

Genomics for GS1-600G8.3 Gene

GeneHancer (GH) Regulatory Elements for GS1-600G8.3 Gene

Promoters and enhancers for GS1-600G8.3 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH0XJ013311 Enhancer 0.3 Ensembl 600.7 +1.2 1249 0.6 EBF1 GS1-600G8.3 ATXN3L
GH0XJ013303 Enhancer 0.5 Ensembl 0.4 -5.5 -5451 3.6 POLR2A SOX6 FOSL1 MNT LINC02154 GS1-600G8.3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GS1-600G8.3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GS1-600G8.3 Gene

Genomic Locations for GS1-600G8.3 Gene
chrX:13,310,652-13,319,933
(GRCh38/hg38)
Size:
9,282 bases
Orientation:
Plus strand
chrX:13,328,771-13,338,052
(GRCh37/hg19)
Size:
9,282 bases
Orientation:
Plus strand

Genomic View for GS1-600G8.3 Gene

Genes around GS1-600G8.3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GS1-600G8.3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GS1-600G8.3 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for GS1-600G8.3 Gene

Proteins for GS1-600G8.3 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for GS1-600G8.3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GS1-600G8.3 Gene

Domains & Families for GS1-600G8.3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GS1-600G8.3 Gene

Function for GS1-600G8.3 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GS1-600G8.3 Gene

Localization for GS1-600G8.3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GS1-600G8.3 Gene

Pathways & Interactions for GS1-600G8.3 Gene

GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
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SuperPathways for GS1-600G8.3 Gene

No Data Available

Interacting Proteins for GS1-600G8.3 Gene

Gene Ontology (GO) - Biological Process for GS1-600G8.3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GS1-600G8.3 Gene

Drugs & Compounds for GS1-600G8.3 Gene

Products:

  1. Drug
GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
No Compound Related Data Available

Transcripts for GS1-600G8.3 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for GS1-600G8.3 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for GS1-600G8.3 Gene

No ASD Table

Relevant External Links for GS1-600G8.3 Gene

GeneLoc Exon Structure for
GS1-600G8.3

Expression for GS1-600G8.3 Gene

Products:

  1. Primer
  2. Gene Expression Assay
GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GS1-600G8.3 Gene

mRNA expression in normal human tissues for GS1-600G8.3 Gene
mRNA expression by BioGPS for GS1-600G8.3 GenemRNA expression by GTEx for GS1-600G8.3 Gene

mRNA differential expression in normal tissues according to GTEx for GS1-600G8.3 Gene

This gene is overexpressed in Testis (x50.7).
genes like me logo Genes that share expression patterns with GS1-600G8.3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GS1-600G8.3 Gene

Orthologs for GS1-600G8.3 Gene

Evolution for GS1-600G8.3 Gene

ENSEMBL:
Gene Tree for GS1-600G8.3 (if available)
TreeFam:
Gene Tree for GS1-600G8.3 (if available)

No data available for Orthologs for GS1-600G8.3 Gene

Paralogs for GS1-600G8.3 Gene

No data available for Paralogs for GS1-600G8.3 Gene

Variants for GS1-600G8.3 Gene

Products:

  1. SNP Genotyping and Copy Number Assay
VarElect - NGS phenotyper. Rapid prioritization of variants from NGS data powered by 100+ GeneCards sources

Sequence variations from dbSNP and Humsavar for GS1-600G8.3 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1000929284 -- 13,319,809(+) T/C non_coding_transcript_variant
rs1000960651 -- 13,320,199(+) G/A downstream_transcript_variant
rs1001130157 -- 13,311,363(+) G/C intron_variant
rs1001225332 -- 13,314,418(+) A/G/T intron_variant
rs1001505487 -- 13,310,999(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GS1-600G8.3 Gene

Variant ID Type Subtype PubMed ID
esv3576773 CNV gain 25503493

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for GS1-600G8.3 Gene

Disorders for GS1-600G8.3 Gene

No disorders were found for GS1-600G8.3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GS1-600G8.3 Gene

Publications for GS1-600G8.3 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

No data available for External Links for GS1-600G8.3 Gene

Products for GS1-600G8.3 Gene

Sources for GS1-600G8.3 Gene

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