Aliases for GS1-594A7.3 Gene

Subcategory (RNA class) for GS1-594A7.3 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for GS1-594A7.3 Gene

  • Uncharacterized LOC104798195 3
  • Novel Transcript 5
  • NONHSAG054077.2 91
  • HSALNG0136781 164
  • AC097625.1 5
  • Lnc-BMX-1 165

External Ids for GS1-594A7.3 Gene

Summaries for GS1-594A7.3 Gene

GeneCards Summary for GS1-594A7.3 Gene

GS1-594A7.3 (Uncharacterized LOC104798195) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for GS1-594A7.3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GS1-594A7.3 Gene

Genomics for GS1-594A7.3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for GS1-594A7.3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ015579 Enhancer 1 Ensembl ENCODE 12.1 -22.4 -22372 1.6 LEF1 IKZF1 JUND DPF2 HDAC1 SOX6 GATAD2B TCF12 EP300 CBX3 PIR ACE2 GS1-594A7.3 CLTRN lnc-ACE2-1 HNRNPDLP5 ENSG00000285602
GH0XJ015544 Enhancer 0.8 Ensembl 11.6 -55.3 -55293 5.2 IKZF1 JUND NR2C1 DPF2 TCF12 EP300 HMBOX1 CTBP1 ZBTB2 CEBPB PIR ACE2 GS1-594A7.3 HNRNPDLP5 RF00017-8173 BMX
GH0XJ015356 Enhancer 0.7 Ensembl ENCODE 11.2 -246.2 -246179 1 SP1 RBAK CEBPB FOXA2 YY1 JUND RAD21 HNF4A RXRA HLF PIGA ASB11 BMX PIR ACE2 GS1-594A7.3 piR-41405-154 VEGFD PIR-FIGF
GH0XJ015507 Promoter 0.4 EPDnew 10.8 -95.6 -95589 0.1 CTCF BMX ACE2 GS1-594A7.3 PIR RF00017-8173
GH0XJ015509 Enhancer 0.4 Ensembl 10.8 -91.3 -91279 1.2 NFE2 IKZF1 EMSY ACE2 GS1-594A7.3 PIR RF00017-8173 BMX
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GS1-594A7.3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for GS1-594A7.3 Gene

Genomic Locations for GS1-594A7.3 Gene
chrX:15,602,880-15,621,485
(GRCh38/hg38)
Size:
18,606 bases
Orientation:
Plus strand
chrX:15,621,004-15,639,607
(GRCh37/hg19)
Size:
18,604 bases
Orientation:
Plus strand

Genomic View for GS1-594A7.3 Gene

Genes around GS1-594A7.3 on UCSC Golden Path with GeneCards custom track
GS1-594A7.3 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
GS1-594A7.3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GS1-594A7.3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GS1-594A7.3 Gene

Proteins for GS1-594A7.3 Gene

Post-translational modifications for GS1-594A7.3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GS1-594A7.3 Gene

Domains & Families for GS1-594A7.3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GS1-594A7.3 Gene

Function for GS1-594A7.3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GS1-594A7.3 Gene

Localization for GS1-594A7.3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GS1-594A7.3 Gene

Pathways & Interactions for GS1-594A7.3 Gene

PathCards logo

SuperPathways for GS1-594A7.3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for GS1-594A7.3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for GS1-594A7.3 Gene

Drugs & Compounds for GS1-594A7.3 Gene

No Compound Related Data Available

Transcripts for GS1-594A7.3 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for GS1-594A7.3 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000D3355_9606 lncRNA 574 4

RefSeq: NR_126564,

Ensembl: ENST00000421585 (view in UCSC) ,

LNCipedia: lnc-BMX-1:1,

NONCODE: NONHSAT136349.2,

URS00008B4334_9606 lncRNA 576 3

LncBook: HSALNT0280460,

LNCipedia: lnc-BMX-1:2,

NONCODE: NONHSAT136348.2,

URS00009C4FE7_9606 lncRNA 682 2

LncBook: HSALNT0280462,

NONCODE: NONHSAT222527.1,

GS1-594A7.3 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for GS1-594A7.3 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for GS1-594A7.3 Gene

No ASD Table

Relevant External Links for GS1-594A7.3 Gene

GeneLoc Exon Structure for
GS1-594A7.3

Expression for GS1-594A7.3 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GS1-594A7.3 Gene

Orthologs for GS1-594A7.3 Gene

Evolution for GS1-594A7.3 Gene

ENSEMBL:
Gene Tree for GS1-594A7.3 (if available)
TreeFam:
Gene Tree for GS1-594A7.3 (if available)

No data available for Orthologs for GS1-594A7.3 Gene

Paralogs for GS1-594A7.3 Gene

No data available for Paralogs for GS1-594A7.3 Gene

Variants for GS1-594A7.3 Gene

Additional dbSNP identifiers (rs#s) for GS1-594A7.3 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GS1-594A7.3 Gene

Disorders for GS1-594A7.3 Gene

Additional Disease Information for GS1-594A7.3

No disorders were found for GS1-594A7.3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GS1-594A7.3 Gene

Publications for GS1-594A7.3 Gene

No publications were found for GS1-594A7.3 Gene.

No data available for Mastermind for GS1-594A7.3 Gene

Products for GS1-594A7.3 Gene

Sources for GS1-594A7.3 Gene