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Aliases for GS1-279B7.1 Gene

Aliases for GS1-279B7.1 Gene

  • Microtubule Associated Protein 1 Light Chain 3 Beta Pseudogene 3

External Ids for GS1-279B7.1 Gene

Previous GeneCards Identifiers for GS1-279B7.1 Gene

  • GC01M185293

Summaries for GS1-279B7.1 Gene

GeneCards Summary for GS1-279B7.1 Gene

GS1-279B7.1 (Microtubule Associated Protein 1 Light Chain 3 Beta Pseudogene) is a Pseudogene.

Additional gene information for GS1-279B7.1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GS1-279B7.1 Gene

Genomics for GS1-279B7.1 Gene

GeneHancer (GH) Regulatory Elements for GS1-279B7.1 Gene

Promoters and enhancers for GS1-279B7.1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J185333 Enhancer 0.6 Ensembl 600.7 +0.7 738 1.4 CBFA2T2 SMARCA4 DPF2 LEF1 TCF12 IRF9 CBFA2T3 L3MBTL2 ENSG00000261024 GS1-279B7.1 ENSG00000273004
GH01J185338 Enhancer 1.1 FANTOM5 ENCODE 0.7 -4.4 -4428 1.9 SP1 ZNF687 RELA CREM MLLT1 ZBED1 IKZF1 ZBTB33 BACH1 IKZF2 NIBAN1 IVNS1ABP SWT1 LOC100422414 RNF2 GS1-279B7.1 ENSG00000261024 RNU7-183P
GH01J185348 Enhancer 1 Ensembl ENCODE 0.4 -14.7 -14729 2.3 ZNF652 ELF3 ZNF24 HNF1A PPARG ZNF384 KAT8 CEBPA GATAD2A SP1 LOC100422414 GS1-279B7.1 ENSG00000261024 RNU7-183P
GH01J185342 Enhancer 0.9 Ensembl ENCODE 0.4 -8.1 -8057 1 ZNF384 PKNOX1 CEBPA GATAD2A RXRB GABPA SOX13 FOXA2 SAP130 CREM IVNS1ABP GS1-279B7.1 ENSG00000261024 RNU7-183P
GH01J185373 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.3 -40.2 -40162 6.4 MAFK ZNF740 PKNOX1 ZNF341 ZNF316 DPF2 TSC22D4 RUNX3 BCL11A GABPA IVNS1ABP EDEM3 RNU7-183P NIBAN1 SWT1 LOC100422414 RNF2 TRMT1L ENSG00000261024 GS1-279B7.1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GS1-279B7.1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GS1-279B7.1 Gene

Genomic Locations for GS1-279B7.1 Gene
chr1:185,323,846-185,335,039
(GRCh38/hg38)
Size:
11,194 bases
Orientation:
Minus strand
chr1:185,290,289-185,304,171
(GRCh37/hg19)
Size:
13,883 bases
Orientation:
Minus strand

Genomic View for GS1-279B7.1 Gene

Genes around GS1-279B7.1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GS1-279B7.1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GS1-279B7.1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GS1-279B7.1 Gene

Proteins for GS1-279B7.1 Gene

Post-translational modifications for GS1-279B7.1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GS1-279B7.1 Gene

Domains & Families for GS1-279B7.1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GS1-279B7.1 Gene

Function for GS1-279B7.1 Gene

Phenotypes From GWAS Catalog for GS1-279B7.1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GS1-279B7.1 Gene

Localization for GS1-279B7.1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GS1-279B7.1 Gene

Pathways & Interactions for GS1-279B7.1 Gene

PathCards logo

SuperPathways for GS1-279B7.1 Gene

No Data Available

Interacting Proteins for GS1-279B7.1 Gene

Gene Ontology (GO) - Biological Process for GS1-279B7.1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GS1-279B7.1 Gene

Drugs & Compounds for GS1-279B7.1 Gene

No Compound Related Data Available

Transcripts for GS1-279B7.1 Gene

mRNA/cDNA for GS1-279B7.1 Gene

(2) Additional mRNA sequences :

Alternative Splicing Database (ASD) splice patterns (SP) for GS1-279B7.1 Gene

No ASD Table

Relevant External Links for GS1-279B7.1 Gene

GeneLoc Exon Structure for
GS1-279B7.1

Expression for GS1-279B7.1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GS1-279B7.1 Gene

mRNA differential expression in normal tissues according to GTEx for GS1-279B7.1 Gene

This gene is overexpressed in Testis (x43.2).
genes like me logo Genes that share expression patterns with GS1-279B7.1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GS1-279B7.1 Gene

Orthologs for GS1-279B7.1 Gene

No data available for Orthologs and Evolution for GS1-279B7.1 Gene

Paralogs for GS1-279B7.1 Gene

No data available for Paralogs for GS1-279B7.1 Gene

Variants for GS1-279B7.1 Gene

Sequence variations from dbSNP and Humsavar for GS1-279B7.1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000014313 -- 185,328,957(-) A/G intron_variant
rs1000085897 -- 185,324,492(-) G/C intron_variant
rs1000108379 -- 185,323,859(-) G/A non_coding_transcript_variant
rs1000268052 -- 185,324,173(-) C/T intron_variant
rs1000375643 -- 185,330,938(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GS1-279B7.1 Gene

Variant ID Type Subtype PubMed ID
esv2758981 CNV loss 17122850
nsv548398 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for GS1-279B7.1 Gene

Disorders for GS1-279B7.1 Gene

No disorders were found for GS1-279B7.1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GS1-279B7.1 Gene

Publications for GS1-279B7.1 Gene

  1. Identification of 9 novel transcripts and two RGSL genes within the hereditary prostate cancer region (HPC1) at 1q25. (PMID: 12801632) Silva AP … Camargo AA (Gene 2003) 3 58

No data available for External Links for GS1-279B7.1 Gene

Products for GS1-279B7.1 Gene

Sources for GS1-279B7.1 Gene

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