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Aliases for GS1-24F4.2 Gene

Subcategory (RNA class) for GS1-24F4.2 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for GS1-24F4.2 Gene

  • Uncharacterized LOC100652791 3

External Ids for GS1-24F4.2 Gene

Previous GeneCards Identifiers for GS1-24F4.2 Gene

  • GC08P006698

Summaries for GS1-24F4.2 Gene

GeneCards Summary for GS1-24F4.2 Gene

GS1-24F4.2 (Uncharacterized LOC100652791) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for GS1-24F4.2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GS1-24F4.2 Gene

Genomics for GS1-24F4.2 Gene

GeneHancer (GH) Regulatory Elements for GS1-24F4.2 Gene

Promoters and enhancers for GS1-24F4.2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J006834 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 600.7 -0.5 -453 2.6 YY1 GLIS2 POLR2A ZBTB8A ZIC2 ZNF629 PATZ1 SP2 ZBTB20 ZXDB ENSG00000245857 XKR5 GS1-24F4.2 GC08M006794 PIR35931
GH08J006833 Enhancer 0.3 ENCODE 600.7 -1.9 -1930 0.1 ZBTB17 ENSG00000245857 GS1-24F4.2 XKR5 GC08M006794 PIR35931
GH08J006840 Promoter/Enhancer 1.3 Ensembl ENCODE 0.4 +5.5 5476 1.5 CC2D1A ELF3 CTCF ZNF24 CREM PRDM1 RAD21 CREB1 ZNF600 ZNF143 GC08M006794 PIR50120 GC08P006842 ENSG00000245857 XKR5 GS1-24F4.2
GH08J006816 Enhancer 0.9 Ensembl ENCODE 0.4 -19.1 -19118 0.5 CTCF ZNF644 RAD21 ZNF143 REST TRIM22 USF1 YY1 POLR2A SMC3 ANGPT2 XKR5 ENSG00000245857 GS1-24F4.2 PIR35931 GC08M006794
GH08J006800 Enhancer 0.9 ENCODE 0.3 -34.7 -34670 0.6 SP1 CTCF MLLT1 MAFK ZNF644 RAD21 GLIS2 ZNF600 GATAD2A ZNF143 MCPH1 ENSG00000246089 PIR35931 ENSG00000245857 GS1-24F4.2 GC08M006794
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GS1-24F4.2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GS1-24F4.2 Gene

Genomic Locations for GS1-24F4.2 Gene
chr8:6,835,554-6,842,454
(GRCh38/hg38)
Size:
6,901 bases
Orientation:
Plus strand
chr8:6,693,076-6,742,798
(GRCh37/hg19)
Size:
49,723 bases
Orientation:
Plus strand

Genomic View for GS1-24F4.2 Gene

Genes around GS1-24F4.2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GS1-24F4.2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GS1-24F4.2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GS1-24F4.2 Gene

Proteins for GS1-24F4.2 Gene

Post-translational modifications for GS1-24F4.2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GS1-24F4.2 Gene

Domains & Families for GS1-24F4.2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GS1-24F4.2 Gene

Function for GS1-24F4.2 Gene

Phenotypes From GWAS Catalog for GS1-24F4.2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GS1-24F4.2 Gene

Localization for GS1-24F4.2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GS1-24F4.2 Gene

Pathways & Interactions for GS1-24F4.2 Gene

PathCards logo

SuperPathways for GS1-24F4.2 Gene

No Data Available

Interacting Proteins for GS1-24F4.2 Gene

Gene Ontology (GO) - Biological Process for GS1-24F4.2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GS1-24F4.2 Gene

Drugs & Compounds for GS1-24F4.2 Gene

No Compound Related Data Available

Transcripts for GS1-24F4.2 Gene

mRNA/cDNA for GS1-24F4.2 Gene

(2) Additional mRNA sequences :

Alternative Splicing Database (ASD) splice patterns (SP) for GS1-24F4.2 Gene

No ASD Table

Relevant External Links for GS1-24F4.2 Gene

GeneLoc Exon Structure for
GS1-24F4.2

Expression for GS1-24F4.2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GS1-24F4.2 Gene

mRNA differential expression in normal tissues according to GTEx for GS1-24F4.2 Gene

This gene is overexpressed in Testis (x40.3).
genes like me logo Genes that share expression patterns with GS1-24F4.2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GS1-24F4.2 Gene

Orthologs for GS1-24F4.2 Gene

No data available for Orthologs and Evolution for GS1-24F4.2 Gene

Paralogs for GS1-24F4.2 Gene

No data available for Paralogs for GS1-24F4.2 Gene

Variants for GS1-24F4.2 Gene

Sequence variations from dbSNP and Humsavar for GS1-24F4.2 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000201861 -- 6,833,828(+) C/G upstream_transcript_variant
rs1000254231 -- 6,833,647(+) C/T upstream_transcript_variant
rs1000448715 -- 6,834,687(+) G/A upstream_transcript_variant
rs1000459315 -- 6,841,756(+) G/T non_coding_transcript_variant
rs1000479917 -- 6,834,770(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for GS1-24F4.2 Gene

Variant ID Type Subtype PubMed ID
dgv6878n100 CNV gain 25217958
esv2422383 CNV duplication 17116639
esv2752262 CNV gain 17911159
esv3576520 CNV gain 25503493
nsv1015244 CNV gain 25217958
nsv1021684 CNV loss 25217958
nsv1031577 CNV gain 25217958
nsv465436 CNV gain 19166990
nsv465437 CNV gain 19166990
nsv610004 CNV gain 21841781
nsv610006 CNV gain 21841781
nsv610007 CNV gain 21841781
nsv831220 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for GS1-24F4.2 Gene

Disorders for GS1-24F4.2 Gene

No disorders were found for GS1-24F4.2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GS1-24F4.2 Gene

Publications for GS1-24F4.2 Gene

No publications were found for GS1-24F4.2 Gene.

No data available for External Links for GS1-24F4.2 Gene

Products for GS1-24F4.2 Gene

Sources for GS1-24F4.2 Gene

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