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Aliases for GS1-124K5.11 Gene

Aliases for GS1-124K5.11 Gene

  • RAB Guanine Nucleotide Exchange Factor 1 Pseudogene 3

External Ids for GS1-124K5.11 Gene

Summaries for GS1-124K5.11 Gene

GeneCards Summary for GS1-124K5.11 Gene

GS1-124K5.11 (RAB Guanine Nucleotide Exchange Factor 1 Pseudogene) is a Pseudogene.

Additional gene information for GS1-124K5.11 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GS1-124K5.11 Gene

Genomics for GS1-124K5.11 Gene

GeneHancer (GH) Regulatory Elements for GS1-124K5.11 Gene

Promoters and enhancers for GS1-124K5.11 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GS1-124K5.11 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GS1-124K5.11 Gene

Genomic Locations for GS1-124K5.11 Gene
chr7:66,530,305-66,592,407
(GRCh38/hg38)
Size:
62,103 bases
Orientation:
Minus strand
chr7:66,010,634-66,057,373
(GRCh37/hg19)
Size:
46,740 bases
Orientation:
Minus strand

Genomic View for GS1-124K5.11 Gene

Genes around GS1-124K5.11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GS1-124K5.11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GS1-124K5.11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GS1-124K5.11 Gene

Proteins for GS1-124K5.11 Gene

Post-translational modifications for GS1-124K5.11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GS1-124K5.11 Gene

Domains & Families for GS1-124K5.11 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GS1-124K5.11 Gene

Function for GS1-124K5.11 Gene

Phenotypes From GWAS Catalog for GS1-124K5.11 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GS1-124K5.11 Gene

Localization for GS1-124K5.11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GS1-124K5.11 Gene

Pathways & Interactions for GS1-124K5.11 Gene

PathCards logo

SuperPathways for GS1-124K5.11 Gene

No Data Available

Interacting Proteins for GS1-124K5.11 Gene

Gene Ontology (GO) - Biological Process for GS1-124K5.11 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GS1-124K5.11 Gene

Drugs & Compounds for GS1-124K5.11 Gene

No Compound Related Data Available

Transcripts for GS1-124K5.11 Gene

mRNA/cDNA for GS1-124K5.11 Gene

(15) Additional mRNA sequences :

Alternative Splicing Database (ASD) splice patterns (SP) for GS1-124K5.11 Gene

No ASD Table

Relevant External Links for GS1-124K5.11 Gene

GeneLoc Exon Structure for
GS1-124K5.11

Expression for GS1-124K5.11 Gene

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GS1-124K5.11 Gene

Orthologs for GS1-124K5.11 Gene

No data available for Orthologs and Evolution for GS1-124K5.11 Gene

Paralogs for GS1-124K5.11 Gene

No data available for Paralogs for GS1-124K5.11 Gene

Variants for GS1-124K5.11 Gene

Sequence variations from dbSNP and Humsavar for GS1-124K5.11 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000017878 -- 66,577,744(-) C/T intron_variant
rs1000103279 -- 66,575,037(-) G/C intron_variant
rs1000138484 -- 66,539,598(-) T/C genic_downstream_transcript_variant, intron_variant
rs1000156848 -- 66,556,854(-) G/C intron_variant
rs1000163936 -- 66,565,450(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GS1-124K5.11 Gene

Variant ID Type Subtype PubMed ID
dgv1114n67 CNV gain 20364138
esv3367991 CNV duplication 20981092
esv3613505 CNV gain 21293372
esv3613512 CNV gain 21293372
esv3613513 CNV loss 21293372
esv3891135 CNV gain 25118596
nsv473096 CNV novel sequence insertion 20440878
nsv824150 CNV gain 20364138
nsv970868 CNV duplication 23825009
nsv981510 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for GS1-124K5.11 Gene

Disorders for GS1-124K5.11 Gene

No disorders were found for GS1-124K5.11 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GS1-124K5.11 Gene

Publications for GS1-124K5.11 Gene

  1. Genome-wide joint SNP and CNV analysis of aortic root diameter in African Americans: the HyperGEN study. (PMID: 21223598) Wineinger NE … Tiwari HK (BMC medical genomics 2011) 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  5. Identification of psi3Tom20, a novel processed pseudogene of the human Tom20 gene, and complete characterization of psi1Tom20 and psi2Tom20. (PMID: 10517315) Hernández JM … Hernández-Yago J (Molecular & general genetics : MGG 1999) 3 58

No data available for External Links for GS1-124K5.11 Gene

Products for GS1-124K5.11 Gene

Sources for GS1-124K5.11 Gene

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