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Aliases for GRTP1-AS1 Gene

Subcategory (RNA class) for GRTP1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for GRTP1-AS1 Gene

  • GRTP1 Antisense RNA 1 2 3 5
  • GRTP1 Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for GRTP1-AS1 Gene

Previous GeneCards Identifiers for GRTP1-AS1 Gene

  • GC00U933324
  • GC13P114006

Summaries for GRTP1-AS1 Gene

GeneCards Summary for GRTP1-AS1 Gene

GRTP1-AS1 (GRTP1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for GRTP1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GRTP1-AS1 Gene

Genomics for GRTP1-AS1 Gene

GeneHancer (GH) Regulatory Elements for GRTP1-AS1 Gene

Promoters and enhancers for GRTP1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J113351 Promoter/Enhancer 1 Ensembl ENCODE 600.7 -0.2 -156 1 SP1 YY1 NR2F2 HNF4A RXRA GRTP1-AS1 GRTP1 ENSG00000276434 GC13M113076
GH13J113352 Enhancer 0.4 ENCODE 600.7 -1.4 -1412 0.2 ZNF18 RAD21 GRTP1-AS1 ENSG00000276434 GRTP1 GC13M113076
GH13J113350 Enhancer 0.2 ENCODE 600.7 -0.9 -940 0 GRTP1-AS1 GRTP1 ENSG00000276434 GC13M113076
GH13J113489 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE 9.9 +140.7 140705 8.4 SP1 ZFX ELF3 MNT NKRF MLLT1 ZNF121 CEBPG POLR2A ZNF687 TMCO3 ADPRHL1 DCUN1D2 TUBGCP3 PCID2 GRTP1 CDC16 DCUN1D2-AS CHAMP1 GRTP1-AS1
GH13J113174 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 10.6 -174.5 -174521 8.3 POLR2A ZIC2 JUN JUND USF1 FOS ZFHX2 EGR2 PROZ PCID2 CUL4A KARSP2 F10-AS1 F10 F7 GRTP1 GRTP1-AS1 ENSG00000269356
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GRTP1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GRTP1-AS1 Gene

Genomic Locations for GRTP1-AS1 Gene
chr13:113,351,673-113,361,868
(GRCh38/hg38)
Size:
10,196 bases
Orientation:
Plus strand
chr13:114,005,988-114,016,183
(GRCh37/hg19)
Size:
10,196 bases
Orientation:
Plus strand

Genomic View for GRTP1-AS1 Gene

Genes around GRTP1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GRTP1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GRTP1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GRTP1-AS1 Gene

Proteins for GRTP1-AS1 Gene

Post-translational modifications for GRTP1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GRTP1-AS1 Gene

Domains & Families for GRTP1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GRTP1-AS1 Gene

Function for GRTP1-AS1 Gene

Phenotypes From GWAS Catalog for GRTP1-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GRTP1-AS1 Gene

Localization for GRTP1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GRTP1-AS1 Gene

Pathways & Interactions for GRTP1-AS1 Gene

PathCards logo

SuperPathways for GRTP1-AS1 Gene

No Data Available

Interacting Proteins for GRTP1-AS1 Gene

Gene Ontology (GO) - Biological Process for GRTP1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GRTP1-AS1 Gene

Drugs & Compounds for GRTP1-AS1 Gene

No Compound Related Data Available

Transcripts for GRTP1-AS1 Gene

mRNA/cDNA for GRTP1-AS1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for GRTP1-AS1 Gene

No ASD Table

Relevant External Links for GRTP1-AS1 Gene

GeneLoc Exon Structure for
GRTP1-AS1
ECgene alternative splicing isoforms for
GRTP1-AS1

Expression for GRTP1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GRTP1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for GRTP1-AS1 Gene

This gene is overexpressed in Adrenal Gland (x6.1) and Liver (x5.5).
genes like me logo Genes that share expression patterns with GRTP1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GRTP1-AS1 Gene

Orthologs for GRTP1-AS1 Gene

Evolution for GRTP1-AS1 Gene

ENSEMBL:
Gene Tree for GRTP1-AS1 (if available)
TreeFam:
Gene Tree for GRTP1-AS1 (if available)

No data available for Orthologs for GRTP1-AS1 Gene

Paralogs for GRTP1-AS1 Gene

No data available for Paralogs for GRTP1-AS1 Gene

Variants for GRTP1-AS1 Gene

Sequence variations from dbSNP and Humsavar for GRTP1-AS1 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000371466 -- 113,354,604(+) C/G intron_variant
rs1000384029 -- 113,360,922(+) C/A intron_variant
rs1000427020 -- 113,354,807(+) G/A intron_variant
rs1000986336 -- 113,359,407(+) C/T intron_variant
rs1001448093 -- 113,353,576(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GRTP1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1434678 CNV insertion 17803354
esv2748287 CNV deletion 23290073
esv3892447 CNV gain 25118596
esv988844 CNV insertion 20482838
nsv1048814 CNV gain 25217958
nsv509521 CNV insertion 20534489
nsv563317 CNV loss 21841781
nsv563318 CNV loss 21841781
nsv951927 CNV deletion 24416366

Additional Variant Information for GRTP1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GRTP1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GRTP1-AS1 Gene

Disorders for GRTP1-AS1 Gene

Additional Disease Information for GRTP1-AS1

No disorders were found for GRTP1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GRTP1-AS1 Gene

Publications for GRTP1-AS1 Gene

No publications were found for GRTP1-AS1 Gene.

Products for GRTP1-AS1 Gene

Sources for GRTP1-AS1 Gene

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