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Aliases for GRM7-AS3 Gene

Subcategory (RNA class) for GRM7-AS3 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for GRM7-AS3 Gene

  • GRM7 Antisense RNA 3 2 3 5
  • GRM7 Antisense RNA 3 (Non-Protein Coding) 2 3

External Ids for GRM7-AS3 Gene

Summaries for GRM7-AS3 Gene

GeneCards Summary for GRM7-AS3 Gene

GRM7-AS3 (GRM7 Antisense RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for GRM7-AS3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GRM7-AS3 Gene

Genomics for GRM7-AS3 Gene

GeneHancer (GH) Regulatory Elements for GRM7-AS3 Gene

Promoters and enhancers for GRM7-AS3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J006805 Enhancer 0.4 Ensembl ENCODE 600.7 +0.1 77 0.3 GRM7-AS3 LOC105376943 GRM7 GC03M006543
GH03J006807 Enhancer 0.2 Ensembl 600.7 -0.4 -351 0.4 GRM7-AS3 LOC105376945 GRM7 GC03M006543
GH03J006716 Enhancer 0.8 ENCODE 11.5 +88.0 87961 1.4 RELA CREM MLLT1 RAD21 ZBED1 IKZF1 BACH1 IKZF2 ZNF143 TRIM22 GRM7-AS3 LOC105376944 GRM7 GC03M006543 ENSG00000189229
GH03J006644 Enhancer 0.6 Ensembl 5.4 +160.6 160648 0.4 IKZF1 SMAD5 TRIM22 LEF1 IKZF2 DPF2 BCL11A POLR2A NR2F1 EBF1 GRM7-AS3 PIR47230 PIR42548 ENSG00000189229 GC03M006543
GH03J006646 Enhancer 0.3 Ensembl 5.9 +157.9 157948 1.8 PKNOX1 GRM7-AS3 PIR47230 PIR42548 ENSG00000189229 GC03M006543
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GRM7-AS3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GRM7-AS3 Gene

Genomic Locations for GRM7-AS3 Gene
chr3:6,631,689-6,805,449
(GRCh38/hg38)
Size:
173,761 bases
Orientation:
Minus strand
chr3:6,673,376-6,847,136
(GRCh37/hg19)
Size:
173,761 bases
Orientation:
Minus strand

Genomic View for GRM7-AS3 Gene

Genes around GRM7-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GRM7-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GRM7-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GRM7-AS3 Gene

Proteins for GRM7-AS3 Gene

Post-translational modifications for GRM7-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GRM7-AS3 Gene

Domains & Families for GRM7-AS3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GRM7-AS3 Gene

Function for GRM7-AS3 Gene

Phenotypes From GWAS Catalog for GRM7-AS3 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GRM7-AS3 Gene

Localization for GRM7-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GRM7-AS3 Gene

Pathways & Interactions for GRM7-AS3 Gene

PathCards logo

SuperPathways for GRM7-AS3 Gene

No Data Available

Interacting Proteins for GRM7-AS3 Gene

Gene Ontology (GO) - Biological Process for GRM7-AS3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GRM7-AS3 Gene

Drugs & Compounds for GRM7-AS3 Gene

No Compound Related Data Available

Transcripts for GRM7-AS3 Gene

mRNA/cDNA for GRM7-AS3 Gene

(3) Additional mRNA sequences :
(9) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(11) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for GRM7-AS3 Gene

No ASD Table

Relevant External Links for GRM7-AS3 Gene

GeneLoc Exon Structure for
GRM7-AS3
ECgene alternative splicing isoforms for
GRM7-AS3

Expression for GRM7-AS3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GRM7-AS3 Gene

mRNA differential expression in normal tissues according to GTEx for GRM7-AS3 Gene

This gene is overexpressed in Testis (x47.1).
genes like me logo Genes that share expression patterns with GRM7-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GRM7-AS3 Gene

Orthologs for GRM7-AS3 Gene

Evolution for GRM7-AS3 Gene

ENSEMBL:
Gene Tree for GRM7-AS3 (if available)
TreeFam:
Gene Tree for GRM7-AS3 (if available)

No data available for Orthologs for GRM7-AS3 Gene

Paralogs for GRM7-AS3 Gene

No data available for Paralogs for GRM7-AS3 Gene

Variants for GRM7-AS3 Gene

Sequence variations from dbSNP and Humsavar for GRM7-AS3 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000017337 -- 6,688,994(-) A/T genic_downstream_transcript_variant, intron_variant
rs1000021786 -- 6,752,289(-) C/T intron_variant
rs1000023070 -- 6,719,639(-) G/A genic_downstream_transcript_variant, intron_variant
rs1000027484 -- 6,804,045(-) A/G intron_variant
rs1000032622 -- 6,729,455(-) G/C/T genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GRM7-AS3 Gene

Variant ID Type Subtype PubMed ID
dgv2489n106 CNV deletion 24896259
dgv4673n100 CNV gain 25217958
dgv4674n100 CNV gain 25217958
esv1552559 CNV insertion 17803354
esv23254 CNV gain 19812545
esv2661085 CNV deletion 23128226
esv2724856 CNV deletion 23290073
esv2763214 CNV gain 21179565
esv3303445 CNV mobile element insertion 20981092
esv3306615 CNV mobile element insertion 20981092
esv3308206 CNV mobile element insertion 20981092
esv3323756 CNV insertion 20981092
esv3325426 CNV insertion 20981092
esv3374814 CNV insertion 20981092
esv3493 CNV loss 18987735
esv3561408 CNV deletion 23714750
esv3561410 CNV deletion 23714750
esv3595167 CNV loss 21293372
esv3595168 CNV loss 21293372
esv3595171 CNV loss 21293372
esv3595173 CNV loss 21293372
esv3595174 CNV loss 21293372
esv3893652 CNV loss 25118596
esv8418 CNV loss 19470904
nsv1006252 CNV gain 25217958
nsv1009743 CNV loss 25217958
nsv1012638 CNV loss 25217958
nsv1072235 CNV deletion 25765185
nsv1147232 CNV insertion 26484159
nsv441811 CNV loss 18776908
nsv509813 OTHER sequence alteration 20534489
nsv589567 CNV loss 21841781
nsv589568 CNV gain 21841781
nsv821973 CNV gain 20364138
nsv956818 CNV deletion 24416366
nsv966986 CNV duplication 23825009

Additional Variant Information for GRM7-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GRM7-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GRM7-AS3 Gene

Disorders for GRM7-AS3 Gene

Additional Disease Information for GRM7-AS3

No disorders were found for GRM7-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GRM7-AS3 Gene

Publications for GRM7-AS3 Gene

No publications were found for GRM7-AS3 Gene.

Products for GRM7-AS3 Gene

Sources for GRM7-AS3 Gene

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