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Aliases for GRM5-AS1 Gene

Subcategory (RNA class) for GRM5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for GRM5-AS1 Gene

  • GRM5 Antisense RNA 1 2 3 5
  • GRM5 Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for GRM5-AS1 Gene

Previous GeneCards Identifiers for GRM5-AS1 Gene

  • GC11P088239

Summaries for GRM5-AS1 Gene

GeneCards Summary for GRM5-AS1 Gene

GRM5-AS1 (GRM5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for GRM5-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GRM5-AS1 Gene

Genomics for GRM5-AS1 Gene

GeneHancer (GH) Regulatory Elements for GRM5-AS1 Gene

Promoters and enhancers for GRM5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J088300 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 10.4 -202.0 -202003 4.1 SP1 NKRF ZNF687 RELA CREM MLLT1 ZBED1 IKZF1 ZBTB33 BACH1 RAB38 CTSC GRM5-AS1 ENSG00000255241 ENSG00000255102 ENSG00000206690 GC11M088197
GH11J088534 Enhancer 1.2 FANTOM5 Ensembl ENCODE 11.1 +32.5 32538 4.3 ZSCAN21 MAFK POLR2A ZNF629 REST BRCA1 CEBPB JUN SP1 RCOR1 GRM5-AS1 ENSG00000255102 ENSG00000206690 ENSG00000255241 CTSC RNU6-16P GC11M088613 GRM5
GH11J088552 Enhancer 1.2 FANTOM5 Ensembl ENCODE 10.4 +50.0 49974 4.3 CTCF RAD21 POLR2A ZNF143 REST TRIM22 SMARCC2 BRCA1 CEBPB JUN GRM5-AS1 RNU6-16P ENSG00000206690 ENSG00000255241 ENSG00000255102 GC11M088613 GRM5
GH11J088414 Enhancer 1 ENCODE dbSUPER 10.6 -89.3 -89271 2.1 SP7 MZF1 ZNF639 MTA1 REST LEF1 HDAC1 TCF7L2 CEBPB CHD2 GRM5-AS1 CTSC GAPDHP70 GC11P088452 LOC101929174
GH11J088383 Enhancer 0.9 Ensembl ENCODE 10.4 -120.3 -120255 1.8 PRDM1 SMARCA4 ZNF585B CEBPB JUN JUND OSR2 FOSL1 FOSL2 GATA3 CTSC GRM5-AS1 GC11M088378 GC11M088400 LOC101929174
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GRM5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GRM5-AS1 Gene

Genomic Locations for GRM5-AS1 Gene
chr11:88,504,576-88,524,054
(GRCh38/hg38)
Size:
19,479 bases
Orientation:
Plus strand
chr11:88,237,744-88,257,222
(GRCh37/hg19)
Size:
19,479 bases
Orientation:
Plus strand

Genomic View for GRM5-AS1 Gene

Genes around GRM5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GRM5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GRM5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GRM5-AS1 Gene

Proteins for GRM5-AS1 Gene

Post-translational modifications for GRM5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GRM5-AS1 Gene

Domains & Families for GRM5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GRM5-AS1 Gene

Function for GRM5-AS1 Gene

Phenotypes From GWAS Catalog for GRM5-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GRM5-AS1 Gene

Localization for GRM5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GRM5-AS1 Gene

Pathways & Interactions for GRM5-AS1 Gene

PathCards logo

SuperPathways for GRM5-AS1 Gene

No Data Available

Interacting Proteins for GRM5-AS1 Gene

Gene Ontology (GO) - Biological Process for GRM5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GRM5-AS1 Gene

Drugs & Compounds for GRM5-AS1 Gene

No Compound Related Data Available

Transcripts for GRM5-AS1 Gene

mRNA/cDNA for GRM5-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for GRM5-AS1 Gene

No ASD Table

Relevant External Links for GRM5-AS1 Gene

GeneLoc Exon Structure for
GRM5-AS1
ECgene alternative splicing isoforms for
GRM5-AS1

Expression for GRM5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GRM5-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for GRM5-AS1 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x7.2), Brain - Anterior cingulate cortex (BA24) (x6.8), Brain - Nucleus accumbens (basal ganglia) (x6.3), Brain - Caudate (basal ganglia) (x5.9), Brain - Cortex (x5.6), Brain - Putamen (basal ganglia) (x5.2), and Brain - Hippocampus (x4.3).
genes like me logo Genes that share expression patterns with GRM5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GRM5-AS1 Gene

Orthologs for GRM5-AS1 Gene

Evolution for GRM5-AS1 Gene

ENSEMBL:
Gene Tree for GRM5-AS1 (if available)
TreeFam:
Gene Tree for GRM5-AS1 (if available)

No data available for Orthologs for GRM5-AS1 Gene

Paralogs for GRM5-AS1 Gene

No data available for Paralogs for GRM5-AS1 Gene

Variants for GRM5-AS1 Gene

Sequence variations from dbSNP and Humsavar for GRM5-AS1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000060556 -- 88,517,162(+) C/T intron_variant
rs1000078750 -- 88,523,224(+) G/T intron_variant
rs1000313961 -- 88,506,287(+) A/G non_coding_transcript_variant
rs1000582796 -- 88,512,022(+) G/A intron_variant
rs1000601412 -- 88,517,657(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GRM5-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3306089 CNV mobile element insertion 20981092
esv3355384 CNV insertion 20981092
esv3548115 CNV deletion 23714750
nsv1035387 CNV gain 25217958
nsv507606 OTHER sequence alteration 20534489

Additional Variant Information for GRM5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GRM5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GRM5-AS1 Gene

Disorders for GRM5-AS1 Gene

Additional Disease Information for GRM5-AS1

No disorders were found for GRM5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GRM5-AS1 Gene

Publications for GRM5-AS1 Gene

No publications were found for GRM5-AS1 Gene.

Products for GRM5-AS1 Gene

Sources for GRM5-AS1 Gene

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