Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GRK5-IT1 Gene

Subcategory (RNA class) for GRK5-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for GRK5-IT1 Gene

  • GRK5 Intronic Transcript 1 2 3 5
  • GRK5 Intronic Transcript 1 (Non-Protein Coding) 2 3

External Ids for GRK5-IT1 Gene

Previous GeneCards Identifiers for GRK5-IT1 Gene

  • GC10P120969

Summaries for GRK5-IT1 Gene

GeneCards Summary for GRK5-IT1 Gene

GRK5-IT1 (GRK5 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for GRK5-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GRK5-IT1 Gene

Genomics for GRK5-IT1 Gene

GeneHancer (GH) Regulatory Elements for GRK5-IT1 Gene

Promoters and enhancers for GRK5-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J119205 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 600.7 +1.8 1828 8.3 ZFX CTCF ELF3 MNT SIX5 NKRF ZNF121 ZSCAN21 SP7 SP1 GRK5 GRK5-IT1 SFXN4 PHACTR2P1 PRDX3 EIF3A RN7SL749P
GH10J119404 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 12.4 +202.5 202487 12 ELF3 ZKSCAN8 CEBPG RERE NFIB TFE3 SP1 HNF1A PPARG SP5 GRK5 GRK5-IT1 RGS10 GC10P119418 MIR4681
GH10J119232 Enhancer 1.2 Ensembl ENCODE dbSUPER 12.3 +27.3 27256 8.6 ELF3 ZNF121 CEBPG TFE3 TRIM24 PRDM1 ZNF384 POLR2A GATAD2A ZNF341 GRK5-IT1 GRK5 ENSG00000236426 SFXN4 GC10P119246 RN7SL749P
GH10J119183 Enhancer 0.6 Ensembl 13.2 -24.1 -24068 0.8 CEBPG ATF7 CREB1 ZFHX2 NFIL3 ATF2 RARA NR2F6 HLF EGR2 SFXN4 GRK5-IT1 GRK5 GC10M119187 PRDX3
GH10J119229 Enhancer 0.2 Ensembl 12.3 +21.9 21932 0.4 GRK5-IT1 GRK5 ENSG00000236426 RN7SL749P GC10P119246
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GRK5-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GRK5-IT1 Gene

Genomic Locations for GRK5-IT1 Gene
chr10:119,208,069-119,212,704
(GRCh38/hg38)
Size:
4,636 bases
Orientation:
Plus strand
chr10:120,968,043-120,971,272
(GRCh37/hg19)
Size:
3,230 bases
Orientation:
Plus strand

Genomic View for GRK5-IT1 Gene

Genes around GRK5-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GRK5-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GRK5-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GRK5-IT1 Gene

Proteins for GRK5-IT1 Gene

Post-translational modifications for GRK5-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GRK5-IT1 Gene

Domains & Families for GRK5-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GRK5-IT1 Gene

Function for GRK5-IT1 Gene

Phenotypes From GWAS Catalog for GRK5-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GRK5-IT1 Gene

Localization for GRK5-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GRK5-IT1 Gene

Pathways & Interactions for GRK5-IT1 Gene

PathCards logo

SuperPathways for GRK5-IT1 Gene

No Data Available

Interacting Proteins for GRK5-IT1 Gene

Gene Ontology (GO) - Biological Process for GRK5-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GRK5-IT1 Gene

Drugs & Compounds for GRK5-IT1 Gene

No Compound Related Data Available

Transcripts for GRK5-IT1 Gene

mRNA/cDNA for GRK5-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for GRK5-IT1 Gene

No ASD Table

Relevant External Links for GRK5-IT1 Gene

GeneLoc Exon Structure for
GRK5-IT1
ECgene alternative splicing isoforms for
GRK5-IT1

Expression for GRK5-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GRK5-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for GRK5-IT1 Gene

This gene is overexpressed in Ovary (x8.6).
genes like me logo Genes that share expression patterns with GRK5-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GRK5-IT1 Gene

Orthologs for GRK5-IT1 Gene

Evolution for GRK5-IT1 Gene

ENSEMBL:
Gene Tree for GRK5-IT1 (if available)
TreeFam:
Gene Tree for GRK5-IT1 (if available)

No data available for Orthologs for GRK5-IT1 Gene

Paralogs for GRK5-IT1 Gene

No data available for Paralogs for GRK5-IT1 Gene

Variants for GRK5-IT1 Gene

Sequence variations from dbSNP and Humsavar for GRK5-IT1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000190964 -- 119,208,357(+) G/A non_coding_transcript_variant
rs1000292804 -- 119,211,973(+) C/G non_coding_transcript_variant
rs1000442830 -- 119,206,445(+) C/T upstream_transcript_variant
rs1000834091 -- 119,208,444(+) C/T non_coding_transcript_variant
rs1000857201 -- 119,206,296(+) C/T upstream_transcript_variant

Additional Variant Information for GRK5-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GRK5-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GRK5-IT1 Gene

Disorders for GRK5-IT1 Gene

No disorders were found for GRK5-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GRK5-IT1 Gene

Publications for GRK5-IT1 Gene

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 58

No data available for External Links for GRK5-IT1 Gene

Products for GRK5-IT1 Gene

Sources for GRK5-IT1 Gene

Content
Loading form....