Aliases for GRIK1-AS1 Gene

Subcategory (RNA class) for GRIK1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for GRIK1-AS1 Gene

  • GRIK1 Antisense RNA 1 2 3 5
  • GRIK1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • GRIK1 Antisense RNA (Non-Protein Coding) 2 3
  • GRIK1-AS1 2 168
  • Chromosome 21 Open Reading Frame 9 2
  • Non-Protein Coding RNA 110 2
  • NONHSAG032630 92
  • HSALNG0132566 167
  • NCRNA00110 3
  • GRIK1-AS 3
  • C21orf9 3
  • GRIK1AS 3

External Ids for GRIK1-AS1 Gene

Previous HGNC Symbols for GRIK1-AS1 Gene

  • C21orf9
  • NCRNA00110
  • GRIK1AS
  • GRIK1-AS

Previous GeneCards Identifiers for GRIK1-AS1 Gene

  • GC21P031122

Summaries for GRIK1-AS1 Gene

GeneCards Summary for GRIK1-AS1 Gene

GRIK1-AS1 (GRIK1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for GRIK1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GRIK1-AS1 Gene

Genomics for GRIK1-AS1 Gene

GeneHancer (GH) Regulatory Elements for GRIK1-AS1 Gene

Promoters and enhancers for GRIK1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J029071 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 5.4 -671.9 -671859 10.6 ZBTB40 ZNF217 EP300 ZSCAN5C TCF12 SIN3A MYC NRF1 POLR2G SP1 CCT8 MAP3K7CL piR-40348-025 piR-36531-015 piR-58297-288 LTN1 RPL12P9 ENSG00000231125 RWDD2B GRIK1-AS1
GH21J029697 Enhancer 0.7 Ensembl 10.9 -50.4 -50374 0.8 PHB2 ZBTB5 AFF1 TOE1 ZNF662 TRIM24 SPI1 EP400 NCOA4 ATF2 LTN1 ENSG00000231125 USP16 GRIK1-AS1 RPL23P2 RPL12P9 piR-60334-003 piR-50437-419 GRIK1
GH21J029129 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE dbSUPER 4.9 -616.9 -616898 3.8 JUND FOS NR2F2 ZNF316 NCOR1 POLR2A NBN FOSL1 TAL1 MAFK MAP3K7CL RWDD2B GRIK1-AS1 RPL12P9 lnc-CCT8-3
GH21J029786 Enhancer 0.5 Ensembl 11.5 +38.6 38625 1.2 HNF4A YY1 HNF4G REST SP1 FOXA1 GRIK1-AS1 USP16 BACH1-IT1 RF01061-104 piR-31199-206 GRIK1
GH21J029089 Enhancer 1 ENCODE dbSUPER 5.4 -656.4 -656440 3.3 HNRNPK CTCF ZSCAN5C JUND FOS ZNF639 ZNF10 REST EP300 RAD21 RWDD2B CCT8 N6AMT1 GRIK1-AS1 LTN1 GRIK1 MAP3K7CL lnc-CCT8-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GRIK1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GRIK1-AS1 Gene

Genomic Locations for GRIK1-AS1 Gene
chr21:29,748,175-29,764,006
(GRCh38/hg38)
Size:
15,832 bases
Orientation:
Plus strand
chr21:31,120,494-31,136,325
(GRCh37/hg19)
Size:
15,832 bases
Orientation:
Plus strand

Genomic View for GRIK1-AS1 Gene

Genes around GRIK1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GRIK1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GRIK1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GRIK1-AS1 Gene

Proteins for GRIK1-AS1 Gene

Post-translational modifications for GRIK1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GRIK1-AS1 Gene

Domains & Families for GRIK1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GRIK1-AS1 Gene

Function for GRIK1-AS1 Gene

Animal Model Products

CRISPR Products

miRNA for GRIK1-AS1 Gene

miRTarBase miRNAs that target GRIK1-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GRIK1-AS1 Gene

Localization for GRIK1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GRIK1-AS1 Gene

Pathways & Interactions for GRIK1-AS1 Gene

PathCards logo

SuperPathways for GRIK1-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for GRIK1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for GRIK1-AS1 Gene

Drugs & Compounds for GRIK1-AS1 Gene

No Compound Related Data Available

Transcripts for GRIK1-AS1 Gene

mRNA/cDNA for GRIK1-AS1 Gene

11 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
7 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
4 LncBook transcripts :
7 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for GRIK1-AS1 Gene

No ASD Table

Relevant External Links for GRIK1-AS1 Gene

GeneLoc Exon Structure for
GRIK1-AS1

Expression for GRIK1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for GRIK1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for GRIK1-AS1 Gene

This gene is overexpressed in Breast - Mammary Tissue (x4.4).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for GRIK1-AS1

SOURCE GeneReport for Unigene cluster for GRIK1-AS1 Gene:

Hs.473554
genes like me logo Genes that share expression patterns with GRIK1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GRIK1-AS1 Gene

Orthologs for GRIK1-AS1 Gene

Evolution for GRIK1-AS1 Gene

ENSEMBL:
Gene Tree for GRIK1-AS1 (if available)
TreeFam:
Gene Tree for GRIK1-AS1 (if available)

No data available for Orthologs for GRIK1-AS1 Gene

Paralogs for GRIK1-AS1 Gene

No data available for Paralogs for GRIK1-AS1 Gene

Variants for GRIK1-AS1 Gene

Additional dbSNP identifiers (rs#s) for GRIK1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for GRIK1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2671877 CNV deletion 23128226
esv3557616 CNV deletion 23714750
esv3646805 CNV loss 21293372

Additional Variant Information for GRIK1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GRIK1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for GRIK1-AS1 Gene

Disorders for GRIK1-AS1 Gene

Additional Disease Information for GRIK1-AS1

No disorders were found for GRIK1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GRIK1-AS1 Gene

Publications for GRIK1-AS1 Gene

  1. Annotation of human chromosome 21 for relevance to Down syndrome: gene structure and expression analysis. (PMID: 12036298) Gardiner K … Davisson M (Genomics 2002) 3 54
  2. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 54

Products for GRIK1-AS1 Gene

Sources for GRIK1-AS1 Gene