Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GRIK1-AS1 Gene

Subcategory (RNA class) for GRIK1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for GRIK1-AS1 Gene

  • GRIK1 Antisense RNA 1 2 3 5
  • GRIK1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • GRIK1 Antisense RNA (Non-Protein Coding) 2 3
  • Chromosome 21 Open Reading Frame 9 2
  • Non-Protein Coding RNA 110 2
  • NCRNA00110 3
  • GRIK1-AS 3
  • C21orf9 3
  • GRIK1AS 3

External Ids for GRIK1-AS1 Gene

Previous HGNC Symbols for GRIK1-AS1 Gene

  • C21orf9
  • NCRNA00110
  • GRIK1AS
  • GRIK1-AS

Previous GeneCards Identifiers for GRIK1-AS1 Gene

  • GC21P031122

Summaries for GRIK1-AS1 Gene

GeneCards Summary for GRIK1-AS1 Gene

GRIK1-AS1 (GRIK1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for GRIK1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GRIK1-AS1 Gene

Genomics for GRIK1-AS1 Gene

GeneHancer (GH) Regulatory Elements for GRIK1-AS1 Gene

Promoters and enhancers for GRIK1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J029748 Enhancer 0.4 Ensembl 600.7 +0.8 826 0.4 PTBP1 CBX1 ZNF24 GRIK1-AS1 GC21P029804 GRIK1
GH21J029075 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE 5.4 -669.8 -669759 6.4 SP1 NKRF ZNF687 NFIB ZSCAN21 SP7 ZNF548 KLF14 PRDM1 MLLT1 MAP3K7CL GC21P029079 ENSG00000231125 LTN1 CCT8 RWDD2B RPL12P9 USP16 RPL23P2 GRIK1-AS1
GH21J029129 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 4.9 -616.8 -616797 4 CBFA2T2 MLLT1 IKZF1 POLR2A IKZF2 ZNF316 SCRT2 DPF2 RUNX3 USF1 MAP3K7CL RWDD2B GRIK1-AS1 RPL12P9 GC21M029140 ENSG00000201984
GH21J029697 Enhancer 0.7 Ensembl 10.9 -50.6 -50574 1.2 CC2D1A TRIM24 PRDM1 SMARCA4 GMEB1 ZNF512 ZNF24 PHB2 RUNX3 ZNF662 LTN1 USP16 ENSG00000231125 RPL12P9 GRIK1-AS1 RPL23P2 GC21P029687 GRIK1
GH21J029089 Enhancer 1 ENCODE dbSUPER 5.4 -656.4 -656440 3.3 CTCF ZNF384 SP7 SP1 MZF1 RAD21 RXRA PRDM10 REST ZEB2 N6AMT1 USP16 RPL23P2 RWDD2B CCT8 GRIK1-AS1 LTN1 GRIK1 MAP3K7CL GC21P029079
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GRIK1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GRIK1-AS1 Gene

Genomic Locations for GRIK1-AS1 Gene
chr21:29,748,175-29,764,006
(GRCh38/hg38)
Size:
15,832 bases
Orientation:
Plus strand
chr21:31,120,494-31,136,325
(GRCh37/hg19)
Size:
15,832 bases
Orientation:
Plus strand

Genomic View for GRIK1-AS1 Gene

Genes around GRIK1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GRIK1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GRIK1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GRIK1-AS1 Gene

Proteins for GRIK1-AS1 Gene

Post-translational modifications for GRIK1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GRIK1-AS1 Gene

Domains & Families for GRIK1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GRIK1-AS1 Gene

Function for GRIK1-AS1 Gene

Animal Model Products

CRISPR Products

miRNA for GRIK1-AS1 Gene

miRTarBase miRNAs that target GRIK1-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GRIK1-AS1 Gene

Localization for GRIK1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GRIK1-AS1 Gene

Pathways & Interactions for GRIK1-AS1 Gene

PathCards logo

SuperPathways for GRIK1-AS1 Gene

No Data Available

Interacting Proteins for GRIK1-AS1 Gene

Gene Ontology (GO) - Biological Process for GRIK1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GRIK1-AS1 Gene

Drugs & Compounds for GRIK1-AS1 Gene

No Compound Related Data Available

Transcripts for GRIK1-AS1 Gene

mRNA/cDNA for GRIK1-AS1 Gene

(3) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(6) RNA Central transcripts :

Unigene Clusters for GRIK1-AS1 Gene

GRIK1 antisense RNA 1:
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for GRIK1-AS1 Gene

No ASD Table

Relevant External Links for GRIK1-AS1 Gene

GeneLoc Exon Structure for
GRIK1-AS1
ECgene alternative splicing isoforms for
GRIK1-AS1

Expression for GRIK1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GRIK1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for GRIK1-AS1 Gene

This gene is overexpressed in Breast - Mammary Tissue (x4.4).

SOURCE GeneReport for Unigene cluster for GRIK1-AS1 Gene:

Hs.473554
genes like me logo Genes that share expression patterns with GRIK1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GRIK1-AS1 Gene

Orthologs for GRIK1-AS1 Gene

Evolution for GRIK1-AS1 Gene

ENSEMBL:
Gene Tree for GRIK1-AS1 (if available)
TreeFam:
Gene Tree for GRIK1-AS1 (if available)

No data available for Orthologs for GRIK1-AS1 Gene

Paralogs for GRIK1-AS1 Gene

No data available for Paralogs for GRIK1-AS1 Gene

Variants for GRIK1-AS1 Gene

Sequence variations from dbSNP and Humsavar for GRIK1-AS1 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000302650 -- 29,751,900(+) C/T intron_variant
rs1000640302 -- 29,750,775(+) A/C intron_variant
rs1000659199 -- 29,757,435(+) A/G intron_variant
rs1000751316 -- 29,747,335(+) G/A upstream_transcript_variant
rs1000833617 -- 29,760,910(+) C/ intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GRIK1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2671877 CNV deletion 23128226
esv3557616 CNV deletion 23714750
esv3646805 CNV loss 21293372

Additional Variant Information for GRIK1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GRIK1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GRIK1-AS1 Gene

Disorders for GRIK1-AS1 Gene

Additional Disease Information for GRIK1-AS1

No disorders were found for GRIK1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GRIK1-AS1 Gene

Publications for GRIK1-AS1 Gene

  1. Annotation of human chromosome 21 for relevance to Down syndrome: gene structure and expression analysis. (PMID: 12036298) Gardiner K … Davisson M (Genomics 2002) 3 58
  2. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 58

Products for GRIK1-AS1 Gene

Sources for GRIK1-AS1 Gene

Content
Loading form....