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Aliases for GRID1-AS1 Gene

Subcategory (RNA class) for GRID1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for GRID1-AS1 Gene

  • GRID1 Antisense RNA 1 2 3 5
  • GRID1 Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for GRID1-AS1 Gene

Previous GeneCards Identifiers for GRID1-AS1 Gene

  • GC10P087338

Summaries for GRID1-AS1 Gene

GeneCards Summary for GRID1-AS1 Gene

GRID1-AS1 (GRID1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for GRID1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GRID1-AS1 Gene

Genomics for GRID1-AS1 Gene

GeneHancer (GH) Regulatory Elements for GRID1-AS1 Gene

Promoters and enhancers for GRID1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J085648 Enhancer 0.4 ENCODE 11.3 +70.7 70744 0.9 ZNF189 GFI1B RN7SKP238 GRID1-AS1 ENSG00000270002 GRID1
GH10J085650 Enhancer 0.4 ENCODE 11.3 +73.3 73332 1.8 RFX1 RXRA ZBTB17 RN7SKP238 GRID1-AS1 ENSG00000236606 GRID1
GH10J085660 Enhancer 0.2 ENCODE 11.2 +83.5 83516 1.2 GRID1-AS1 RN7SKP238 ENSG00000236606 GRID1
GH10J085600 Enhancer 0.4 ENCODE 4.6 +23.0 22979 1.2 ZNF316 POLR2A MAFK GRID1-AS1 ENSG00000278333 LOC105378404 GRID1
GH10J085603 Enhancer 0.6 ENCODE 0.3 +25.7 25728 0.2 ZNF639 ZBTB21 ZNF398 ATF2 ZNF843 ZNF366 ZNF629 SP7 ENSG00000278333 LOC105378404 GRID1-AS1 GRID1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GRID1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GRID1-AS1 Gene

Genomic Locations for GRID1-AS1 Gene
chr10:85,577,731-85,607,215
(GRCh38/hg38)
Size:
29,485 bases
Orientation:
Plus strand
chr10:87,337,488-87,366,972
(GRCh37/hg19)
Size:
29,485 bases
Orientation:
Plus strand

Genomic View for GRID1-AS1 Gene

Genes around GRID1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GRID1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GRID1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GRID1-AS1 Gene

Proteins for GRID1-AS1 Gene

Post-translational modifications for GRID1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GRID1-AS1 Gene

Domains & Families for GRID1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GRID1-AS1 Gene

Function for GRID1-AS1 Gene

Phenotypes From GWAS Catalog for GRID1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GRID1-AS1 Gene

Localization for GRID1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GRID1-AS1 Gene

Pathways & Interactions for GRID1-AS1 Gene

SuperPathways for GRID1-AS1 Gene

No Data Available

Interacting Proteins for GRID1-AS1 Gene

Gene Ontology (GO) - Biological Process for GRID1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GRID1-AS1 Gene

Drugs & Compounds for GRID1-AS1 Gene

No Compound Related Data Available

Transcripts for GRID1-AS1 Gene

mRNA/cDNA for GRID1-AS1 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Unigene Clusters for GRID1-AS1 Gene

GRID1 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GRID1-AS1 Gene

No ASD Table

Relevant External Links for GRID1-AS1 Gene

GeneLoc Exon Structure for
GRID1-AS1
ECgene alternative splicing isoforms for
GRID1-AS1

Expression for GRID1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GRID1-AS1 Gene

SOURCE GeneReport for Unigene cluster for GRID1-AS1 Gene:

Hs.585483
genes like me logo Genes that share expression patterns with GRID1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GRID1-AS1 Gene

Orthologs for GRID1-AS1 Gene

Evolution for GRID1-AS1 Gene

ENSEMBL:
Gene Tree for GRID1-AS1 (if available)
TreeFam:
Gene Tree for GRID1-AS1 (if available)

No data available for Orthologs for GRID1-AS1 Gene

Paralogs for GRID1-AS1 Gene

No data available for Paralogs for GRID1-AS1 Gene

Variants for GRID1-AS1 Gene

Sequence variations from dbSNP and Humsavar for GRID1-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000037820 -- 85,606,631(+) T/C non_coding_transcript_variant
rs1000044126 -- 85,580,360(+) A/C intron_variant
rs1000054491 -- 85,601,002(+) C/T intron_variant
rs1000109152 -- 85,581,510(+) C/T intron_variant
rs1000130446 -- 85,594,832(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GRID1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3891878 CNV loss 25118596
nsv1052427 CNV gain 25217958
nsv1141879 OTHER inversion 24896259
nsv7476 CNV deletion 18451855

Additional Variant Information for GRID1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GRID1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GRID1-AS1 Gene

Disorders for GRID1-AS1 Gene

Additional Disease Information for GRID1-AS1

No disorders were found for GRID1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GRID1-AS1 Gene

Publications for GRID1-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for GRID1-AS1 Gene

Sources for GRID1-AS1 Gene

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