Aliases for GRHL3-AS1 Gene

Subcategory (RNA class) for GRHL3-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for GRHL3-AS1 Gene

  • GRHL3 Antisense RNA 1 2 3 5
  • GRHL3-AS1 2 5
  • NONHSAG000689.2 91
  • HSALNG0001704 164
  • Lnc-STPG1-1 165

External Ids for GRHL3-AS1 Gene

Previous GeneCards Identifiers for GRHL3-AS1 Gene

  • GC01M024410
  • GC01M024436

Summaries for GRHL3-AS1 Gene

GeneCards Summary for GRHL3-AS1 Gene

GRHL3-AS1 (GRHL3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for GRHL3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GRHL3-AS1 Gene

Genomics for GRHL3-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for GRHL3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J024316 Promoter/Enhancer 2 EPDnew Ensembl ENCODE dbSUPER 600.7 +1.8 1785 7.9 RNF2 ZNF629 PRDM10 IKZF1 KDM1A ZNF692 JUND FOXA1 PRDM1 ZNF143 GRHL3 GRHL3-AS1 piR-42832 piR-62044 NIPAL3
GH01J024390 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 11.2 -70.6 -70645 3.4 SP1 CTCF PRDM10 ZNF629 ZNF512 POLR2A JUND STAT3 ZNF143 RELA STPG1 NIPAL3 IFNLR1 GRHL3 GRHL3-AS1 NCMAP lnc-STPG1-2 piR-42832
GH01J024293 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.5 +27.4 27423 3 PRDM10 ZNF629 IKZF1 JUND FOXA1 SCRT2 CEBPB SP2 SP1 SMARCC1 GRHL3 GRHL3-AS1 RF00017-105 piR-59297-009 IFNLR1
GH01J024283 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.7 +37.0 37009 5 TEAD4 PRDM10 ZNF629 IKZF1 KDM1A ZNF692 FOXA1 ZIC2 REST HDAC1 SRSF10 SRRM1 GRHL3 GRHL3-AS1 PNRC2 ELOA LINC01355 HNRNPR RPL11 SYF2
GH01J024289 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.3 +31.4 31430 3 TEAD4 PRDM10 ZNF629 ZNF692 ZIC2 PATZ1 ZNF24 ZNF600 ZNF341 ZNF561 SRSF10 SYF2 PNRC2 RPL11 SRRM1 GRHL3 GRHL3-AS1 ELOA RF00017-105 piR-59297-009
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GRHL3-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for GRHL3-AS1 Gene

Genomic Locations for GRHL3-AS1 Gene
chr1:24,293,987-24,321,931
(GRCh38/hg38)
Size:
27,945 bases
Orientation:
Minus strand
chr1:24,634,046-24,648,391
(GRCh37/hg19)
Size:
14,346 bases
Orientation:
Minus strand

Genomic View for GRHL3-AS1 Gene

Genes around GRHL3-AS1 on UCSC Golden Path with GeneCards custom track
GRHL3-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
GRHL3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GRHL3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GRHL3-AS1 Gene

Proteins for GRHL3-AS1 Gene

Post-translational modifications for GRHL3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GRHL3-AS1 Gene

Domains & Families for GRHL3-AS1 Gene

Gene Families for GRHL3-AS1 Gene

genes like me logo Genes that share domains with GRHL3-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GRHL3-AS1 Gene

Function for GRHL3-AS1 Gene

Phenotypes From GWAS Catalog for GRHL3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GRHL3-AS1 Gene

Localization for GRHL3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GRHL3-AS1 Gene

Pathways & Interactions for GRHL3-AS1 Gene

PathCards logo

SuperPathways for GRHL3-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for GRHL3-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for GRHL3-AS1 Gene

Drugs & Compounds for GRHL3-AS1 Gene

No Compound Related Data Available

Transcripts for GRHL3-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for GRHL3-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000055188E_9606 lncRNA 856 5

HGNC: 41119,

Ensembl: ENST00000437965 (view in UCSC) ,

LncBook: HSALNT0003294,

LNCipedia: lnc-STPG1-1:2,

NONCODE: NONHSAT001626.2,

URS00008BABEB_9606 lncRNA 2337 3

LncBook: HSALNT0003286,

LNCipedia: lnc-STPG1-1:1,

NONCODE: NONHSAT001624.2,

URS00009AFB84_9606 lncRNA 2816 2

LncBook: HSALNT0003287,

NONCODE: NONHSAT151271.1,

URS00009B92B0_9606 lncRNA 2860 1

NONCODE: NONHSAT151272.1,

GRHL3-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for GRHL3-AS1 Gene

No ASD Table

Relevant External Links for GRHL3-AS1 Gene

GeneLoc Exon Structure for
GRHL3-AS1

No data available for mRNA/cDNA for GRHL3-AS1 Gene

Expression for GRHL3-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GRHL3-AS1 Gene

Orthologs for GRHL3-AS1 Gene

Evolution for GRHL3-AS1 Gene

ENSEMBL:
Gene Tree for GRHL3-AS1 (if available)
TreeFam:
Gene Tree for GRHL3-AS1 (if available)

No data available for Orthologs for GRHL3-AS1 Gene

Paralogs for GRHL3-AS1 Gene

No data available for Paralogs for GRHL3-AS1 Gene

Variants for GRHL3-AS1 Gene

Additional dbSNP identifiers (rs#s) for GRHL3-AS1 Gene

Additional Variant Information for GRHL3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GRHL3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GRHL3-AS1 Gene

Disorders for GRHL3-AS1 Gene

Additional Disease Information for GRHL3-AS1

No disorders were found for GRHL3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GRHL3-AS1 Gene

Publications for GRHL3-AS1 Gene

No publications were found for GRHL3-AS1 Gene.

No data available for Mastermind for GRHL3-AS1 Gene

Products for GRHL3-AS1 Gene

Sources for GRHL3-AS1 Gene