Aliases for GPRIN2 Gene

Aliases for GPRIN2 Gene

  • G Protein Regulated Inducer Of Neurite Outgrowth 2 2 3 5
  • KIAA0514 2 3 4
  • G Protein-Regulated Inducer Of Neurite Outgrowth 2 3 4
  • GRIN2 3 4
  • MGC15171 2
  • GPRIN2 5

External Ids for GPRIN2 Gene

Previous HGNC Symbols for GPRIN2 Gene

  • KIAA0514

Previous GeneCards Identifiers for GPRIN2 Gene

  • GC10P046414
  • GC10P046993
  • GC10M046548

Summaries for GPRIN2 Gene

GeneCards Summary for GPRIN2 Gene

GPRIN2 (G Protein Regulated Inducer Of Neurite Outgrowth 2) is a Protein Coding gene. Diseases associated with GPRIN2 include Combined Oxidative Phosphorylation Deficiency 9. An important paralog of this gene is GPRIN3.

UniProtKB/Swiss-Prot Summary for GPRIN2 Gene

Gene Wiki entry for GPRIN2 Gene

Additional gene information for GPRIN2 Gene

No data available for Entrez Gene Summary , CIViC Summary , Tocris Summary , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GPRIN2 Gene

Genomics for GPRIN2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for GPRIN2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J046555 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +1.1 1117 2.2 ZIC2 POLR2A KLF9 KLF7 USF1 YY1 ZNF274 ZFHX2 AEBP2 GLI4 GPRIN2 NPY4R PARGP1 BMS1P1 BMS1P2 AGAP9 AGAP4 WASHC2C AGAP10P ENSG00000229227
GH10J046558 Enhancer 0.8 Ensembl dbSUPER 600.7 -1.5 -1482 0.2 ZIC2 REST SP1 CTBP1 NR3C1 HHEX FOSL2 SIN3A GATA3 DPF2 GPRIN2 piR-41547-001 SYT15
GH10J046516 Enhancer 0.8 Ensembl ENCODE 7.8 +40.5 40485 1.5 REST SP1 JUND ZNF157 FOS FOSL2 SIN3A ZNF335 BHLHE40 MAFK lnc-SYT15-5 GPRIN2 lnc-SYT15-6 NPY4R ENSG00000285402
GH10J046538 Promoter/Enhancer 1.3 FANTOM5 ENCODE CraniofacialAtlas 4 +17.1 17145 2.6 CTCF TEAD4 KDM1A PRDM1 REST SP1 POLR2A CHD2 HES1 ATF3 SYT15 WASHC2C PARGP1 FAM21FP GPRIN2 piR-52294-014 lnc-SYT15-2 NPY4R
GH10J046468 Enhancer 0.9 FANTOM5 ENCODE 3.2 +88.9 88883 1.2 CTCF PRDM10 KDM1A JUND REST RAD21 ZBTB44 SP1 SMARCC1 ZNF444 piR-32307-001 LINC00842 GPRIN2 NPY4R ANXA8L1 ENSG00000285402
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GPRIN2 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for GPRIN2

Top Transcription factor binding sites by QIAGEN in the GPRIN2 gene promoter:
  • AP-4
  • C/EBPalpha
  • E2F
  • E2F-1
  • E47
  • NF-1
  • NF-1/L
  • p53
  • PPAR-gamma1
  • PPAR-gamma2

Genomic Locations for GPRIN2 Gene

Genomic Locations for GPRIN2 Gene
chr10:46,543,974-46,557,418
(GRCh38/hg38)
Size:
13,445 bases
Orientation:
Minus strand
chr10:46,993,546-47,005,643
(GRCh37/hg19)
Size:
12,098 bases
Orientation:
Plus strand

Genomic View for GPRIN2 Gene

Genes around GPRIN2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GPRIN2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GPRIN2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GPRIN2 Gene

Proteins for GPRIN2 Gene

  • Protein details for GPRIN2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O60269-GRIN2_HUMAN
    Recommended name:
    G protein-regulated inducer of neurite outgrowth 2
    Protein Accession:
    O60269
    Secondary Accessions:
    • Q5SVF0

    Protein attributes for GPRIN2 Gene

    Size:
    458 amino acids
    Molecular mass:
    47450 Da
    Quaternary structure:
    • Interacts with activated forms of GNAO1 and GNAZ.
    SequenceCaution:
    • Sequence=BAA25440.2; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for GPRIN2 Gene

Post-translational modifications for GPRIN2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for GPRIN2 Gene

Domains & Families for GPRIN2 Gene

Gene Families for GPRIN2 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for GPRIN2 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for GPRIN2 Gene

GenScript: Design optimal peptide antigens:
  • G protein-regulated inducer of neurite outgrowth 2 (GRIN2_HUMAN)
genes like me logo Genes that share domains with GPRIN2: view

No data available for Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GPRIN2 Gene

Function for GPRIN2 Gene

Molecular function for GPRIN2 Gene

UniProtKB/Swiss-Prot Function:
May be involved in neurite outgrowth.

Gene Ontology (GO) - Molecular Function for GPRIN2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 15778465
genes like me logo Genes that share ontologies with GPRIN2: view
genes like me logo Genes that share phenotypes with GPRIN2: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for GPRIN2

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GPRIN2 Gene

Localization for GPRIN2 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for GPRIN2 gene
Compartment Confidence
nucleus 3
extracellular 2
plasma membrane 1
cytoskeleton 1
mitochondrion 1
cytosol 1

Subcellular locations from the

Human Protein Atlas (HPA)

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for GPRIN2 Gene

Pathways & Interactions for GPRIN2 Gene

PathCards logo

SuperPathways for GPRIN2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for GPRIN2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GPRIN2 Gene

Drugs & Compounds for GPRIN2 Gene

No Compound Related Data Available

Transcripts for GPRIN2 Gene

mRNA/cDNA for GPRIN2 Gene

1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for GPRIN2

Alternative Splicing Database (ASD) splice patterns (SP) for GPRIN2 Gene

No ASD Table

Relevant External Links for GPRIN2 Gene

GeneLoc Exon Structure for
GPRIN2

Expression for GPRIN2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for GPRIN2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for GPRIN2 Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (x6.8), Skin - Not Sun Exposed (Suprapubic) (x6.6), Lung (x5.0), Brain - Cerebellar Hemisphere (x4.7), and Brain - Cerebellum (x4.5).

Protein differential expression in normal tissues from HIPED for GPRIN2 Gene

This gene is overexpressed in Heart (66.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for GPRIN2 Gene



Protein tissue co-expression partners for GPRIN2 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for GPRIN2

SOURCE GeneReport for Unigene cluster for GPRIN2 Gene:

Hs.523375

mRNA Expression by UniProt/SwissProt for GPRIN2 Gene:

O60269-GRIN2_HUMAN
Tissue specificity: Expressed specifically in the cerebellum.

Evidence on tissue expression from TISSUES for GPRIN2 Gene

  • Nervous system(2.4)
genes like me logo Genes that share expression patterns with GPRIN2: view

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for GPRIN2 Gene

Orthologs for GPRIN2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for GPRIN2 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia GPRIN2 30 31
  • 94.91 (n)
OneToOne
Cow
(Bos Taurus)
Mammalia GPRIN2 30 31
  • 83.22 (n)
OneToOne
Mouse
(Mus musculus)
Mammalia Gprin2 30 17 31
  • 78.9 (n)
OneToOne
Rat
(Rattus norvegicus)
Mammalia Gprin2 30
  • 77.95 (n)
Dog
(Canis familiaris)
Mammalia GPRIN2 31
  • 67 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia GPRIN2 31
  • 38 (a)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia GPRIN2 31
  • 33 (a)
OneToOne
Chicken
(Gallus gallus)
Aves GPRIN2 31
  • 26 (a)
OneToOne
Lizard
(Anolis carolinensis)
Reptilia GPRIN2 31
  • 27 (a)
OneToOne
Zebrafish
(Danio rerio)
Actinopterygii si:ch211-149b19.2 31
  • 9 (a)
ManyToMany
Dr.23013 30
Species where no ortholog for GPRIN2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for GPRIN2 Gene

ENSEMBL:
Gene Tree for GPRIN2 (if available)
TreeFam:
Gene Tree for GPRIN2 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for GPRIN2: view image

Paralogs for GPRIN2 Gene

Paralogs for GPRIN2 Gene

genes like me logo Genes that share paralogs with GPRIN2: view

Variants for GPRIN2 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for GPRIN2 Gene

SNP ID Clinical significance and condition Chr 10 pos Variation AA Info Type
rs11204658 - p.Gly202Trp
rs11204659 - p.Ala233Ser
rs3127679 - p.Ser104Gly
rs3127683 - p.Arg242Gly
rs3127817 - p.Arg5His

Additional dbSNP identifiers (rs#s) for GPRIN2 Gene

Structural Variations from Database of Genomic Variants (DGV) for GPRIN2 Gene

Variant ID Type Subtype PubMed ID
dgv116e214 CNV gain 21293372
dgv147n67 CNV gain 20364138
dgv148n67 CNV gain 20364138
dgv216e212 CNV loss 25503493
dgv218e212 CNV loss 25503493
dgv219e212 CNV gain 25503493
dgv223e212 CNV loss 25503493
dgv22e55 CNV gain 17911159
dgv409e59 CNV duplication 20981092
dgv412e59 CNV duplication 20981092
dgv440n106 CNV duplication 24896259
dgv734n100 CNV gain 25217958
dgv737n100 CNV loss 25217958
dgv738n100 CNV loss 25217958
dgv739n100 CNV gain 25217958
dgv740n100 CNV gain+loss 25217958
dgv742n100 CNV loss 25217958
dgv743n100 CNV gain 25217958
dgv747n100 CNV gain+loss 25217958
dgv748n100 CNV gain 25217958
dgv749n100 CNV gain+loss 25217958
dgv750n100 CNV loss 25217958
dgv751n100 CNV gain 25217958
dgv752n100 CNV loss 25217958
dgv753n100 CNV gain 25217958
dgv759n100 CNV loss 25217958
dgv760n100 CNV gain 25217958
dgv763n100 CNV gain 25217958
dgv764n100 CNV loss 25217958
dgv765n100 CNV loss 25217958
dgv767n100 CNV gain 25217958
dgv768n100 CNV loss 25217958
dgv771n100 CNV loss 25217958
dgv780n100 CNV gain 25217958
dgv781n100 CNV loss 25217958
dgv782n100 CNV loss 25217958
dgv783n100 CNV gain 25217958
dgv8n68 CNV gain 17160897
esv2632472 CNV gain 19546169
esv2736152 CNV deletion 23290073
esv3330359 CNV duplication 20981092
esv3385822 CNV duplication 20981092
esv3440422 CNV duplication 20981092
esv3576928 CNV gain 25503493
esv3578829 CNV loss 25503493
esv3584617 CNV loss 24956385
esv3891799 CNV gain 25118596
nsv1041409 CNV loss 25217958
nsv1044044 CNV gain+loss 25217958
nsv1047710 CNV gain+loss 25217958
nsv1049394 CNV loss 25217958
nsv1050225 CNV gain+loss 25217958
nsv1050696 CNV gain 25217958
nsv1075819 CNV duplication 25765185
nsv1152446 CNV duplication 26484159
nsv437670 CNV loss 16327808
nsv438172 CNV loss 16468122
nsv482145 CNV gain 20164927
nsv550722 CNV gain 21841781
nsv550723 CNV gain 21841781
nsv820817 CNV duplication 20802225
nsv947929 CNV duplication 23825009
nsv951576 CNV duplication 24416366

Variation tolerance for GPRIN2 Gene

Residual Variation Intolerance Score: 99.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 15.81; 97.38% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for GPRIN2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GPRIN2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for GPRIN2 Gene

Disorders for GPRIN2 Gene

MalaCards: The human disease database

(1) MalaCards diseases for GPRIN2 Gene - From: DISEASES

Disorder Aliases PubMed IDs
combined oxidative phosphorylation deficiency 9
  • coxpd9
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with GPRIN2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for GPRIN2 Gene

Publications for GPRIN2 Gene

  1. Prediction of the coding sequences of unidentified human genes. IX. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro. (PMID: 9628581) Nagase T … Ohara O (DNA research : an international journal for rapid publication of reports on genes and genomes 1998) 2 3 4
  2. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P … Rogers J (Nature 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
  4. A candidate target for G protein action in brain. (PMID: 10480904) Chen LT … Kozasa T (The Journal of biological chemistry 1999) 3 4
  5. A reference map of the human binary protein interactome. (PMID: 32296183) Luck K … Calderwood MA (Nature 2020) 3

Products for GPRIN2 Gene

Sources for GPRIN2 Gene