Aliases for GPRC5D-AS1 Gene

Subcategory (RNA class) for GPRC5D-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for GPRC5D-AS1 Gene

  • GPRC5D And HEBP1 Antisense RNA 1 2 3 5
  • GPRC5D-AS1 2 5 165
  • NONHSAG010543.2 91
  • HSALNG0089424 164
  • HSALNG0089423 164
  • RP11-392P7.6 2

External Ids for GPRC5D-AS1 Gene

Summaries for GPRC5D-AS1 Gene

GeneCards Summary for GPRC5D-AS1 Gene

GPRC5D-AS1 (GPRC5D And HEBP1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with GPRC5D-AS1 include Colorectal Cancer.

Additional gene information for GPRC5D-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GPRC5D-AS1 Gene

Genomics for GPRC5D-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for GPRC5D-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GPRC5D-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for GPRC5D-AS1 Gene

Genomic Locations for GPRC5D-AS1 Gene
chr12:12,927,726-13,022,498
(GRCh38/hg38)
Size:
94,773 bases
Orientation:
Plus strand
chr12:13,080,660-13,137,579
(GRCh37/hg19)
Size:
56,920 bases
Orientation:
Plus strand

Genomic View for GPRC5D-AS1 Gene

Genes around GPRC5D-AS1 on UCSC Golden Path with GeneCards custom track
GPRC5D-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
GPRC5D-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GPRC5D-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GPRC5D-AS1 Gene

Proteins for GPRC5D-AS1 Gene

Post-translational modifications for GPRC5D-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GPRC5D-AS1 Gene

Domains & Families for GPRC5D-AS1 Gene

Gene Families for GPRC5D-AS1 Gene

genes like me logo Genes that share domains with GPRC5D-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GPRC5D-AS1 Gene

Function for GPRC5D-AS1 Gene

Phenotypes From GWAS Catalog for GPRC5D-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GPRC5D-AS1 Gene

Localization for GPRC5D-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GPRC5D-AS1 Gene

Pathways & Interactions for GPRC5D-AS1 Gene

PathCards logo

SuperPathways for GPRC5D-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for GPRC5D-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for GPRC5D-AS1 Gene

Drugs & Compounds for GPRC5D-AS1 Gene

No Compound Related Data Available

Transcripts for GPRC5D-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for GPRC5D-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000DB610_9606 lncRNA 566 4

Ensembl: ENST00000545914 (view in UCSC) ,

LncBook: HSALNT0185816,

LNCipedia: GPRC5D-AS1:25,

NONCODE: NONHSAT027016.2,

URS000030665F_9606 lncRNA 457 4

Ensembl: ENST00000538231 (view in UCSC) ,

LncBook: HSALNT0185827,

LNCipedia: GPRC5D-AS1:36,

NONCODE: NONHSAT027022.2,

URS000032D0E3_9606 lncRNA 400 4

Ensembl: ENST00000394742 (view in UCSC) ,

LncBook: HSALNT0185825,

LNCipedia: GPRC5D-AS1:35,

NONCODE: NONHSAT027021.2,

URS000044261A_9606 lncRNA 1746 3

Ensembl: ENST00000499948 (view in UCSC) ,

LncBook: HSALNT0185832,

NONCODE: NONHSAT027026.2,

URS000037C1BA_9606 lncRNA 721 3

Ensembl: ENST00000607894 (view in UCSC) ,

LncBook: HSALNT0185833,

NONCODE: NONHSAT161874.1,

GPRC5D-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for GPRC5D-AS1 Gene

10 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for GPRC5D-AS1 Gene

No ASD Table

Relevant External Links for GPRC5D-AS1 Gene

GeneLoc Exon Structure for
GPRC5D-AS1

Expression for GPRC5D-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for GPRC5D-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GPRC5D-AS1 Gene

Orthologs for GPRC5D-AS1 Gene

Evolution for GPRC5D-AS1 Gene

ENSEMBL:
Gene Tree for GPRC5D-AS1 (if available)
TreeFam:
Gene Tree for GPRC5D-AS1 (if available)

No data available for Orthologs for GPRC5D-AS1 Gene

Paralogs for GPRC5D-AS1 Gene

No data available for Paralogs for GPRC5D-AS1 Gene

Variants for GPRC5D-AS1 Gene

Additional dbSNP identifiers (rs#s) for GPRC5D-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for GPRC5D-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2745567 CNV deletion 23290073
nsv832333 CNV gain 17160897

Additional Variant Information for GPRC5D-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GPRC5D-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for GPRC5D-AS1 Gene

Disorders for GPRC5D-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for GPRC5D-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with GPRC5D-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for GPRC5D-AS1 Gene

Publications for GPRC5D-AS1 Gene

  1. Association between genetic variants in the promoter region of a novel antisense long noncoding RNA RP11-392P7.6 and colorectal cancer risk. (PMID: 28612367) Jin M … Chen K (Environmental and molecular mutagenesis 2017) 2 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
  5. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

Products for GPRC5D-AS1 Gene

Sources for GPRC5D-AS1 Gene