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Aliases for GPRC5D-AS1 Gene

Subcategory (RNA class) for GPRC5D-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for GPRC5D-AS1 Gene

  • GPRC5D And HEBP1 Antisense RNA 1 2 3 5

External Ids for GPRC5D-AS1 Gene

Summaries for GPRC5D-AS1 Gene

GeneCards Summary for GPRC5D-AS1 Gene

GPRC5D-AS1 (GPRC5D And HEBP1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for GPRC5D-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GPRC5D-AS1 Gene

Genomics for GPRC5D-AS1 Gene

GeneHancer (GH) Regulatory Elements for GPRC5D-AS1 Gene

Promoters and enhancers for GPRC5D-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J012924 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 615.6 -1.0 -1047 3.4 ELF3 MNT CBFA2T2 POLR2A AHR TFE3 NCOA6 ELF1 SP1 PPARG GPRC5D-AS1 FAM234B GPRC5A GPRC5D ENSG00000256011 GC12P012915
GH12J013193 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.3 +275.4 275366 19.5 CTCF ZNF384 NFIB MAFK SP7 PRDM1 RAD21 FOSL2 POLR2A PKNOX1 EMP1 HTR7P1 MIR614 GSG1 DDX47 GPRC5D-AS1 ENSG00000255621 HEBP1 ENSG00000221611 LOH12CR2
GH12J012834 Enhancer 1.4 Ensembl ENCODE dbSUPER 10.6 -89.1 -89143 8.9 ZNF121 ZSCAN21 CTCF NCOA3 MAFK SP7 MZF1 GLIS2 POLR2A PKNOX1 DDX47 GPRC5A PTMAP9 MIR614 ENSG00000256011 GPRC5D-AS1 GPRC5D LRP6 RPL13AP20 GC12P012833
GH12J012915 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 7.6 -11.3 -11266 2.8 ELF3 CC2D1A CTCF MAFK TFE3 ZNF384 RAD21 ARID2 ZBTB8A ZIC2 MIR614 GC12P012924 GC12P012923 GC12P012915 GPRC5D-AS1 GPRC5A
GH12J012897 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 6.1 -26.6 -26616 7.5 ZNF121 ZNF384 ZSCAN21 TRIM24 SP7 CREM PRDM1 ZBED1 IKZF1 ZNF600 DDX47 LRP6 GPRC5A GPRC5D-AS1 ENSG00000255621 GC12P012924
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GPRC5D-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GPRC5D-AS1 Gene

Genomic Locations for GPRC5D-AS1 Gene
chr12:12,927,726-12,984,645
(GRCh38/hg38)
Size:
56,920 bases
Orientation:
Plus strand
chr12:13,080,660-13,137,579
(GRCh37/hg19)
Size:
56,920 bases
Orientation:
Plus strand

Genomic View for GPRC5D-AS1 Gene

Genes around GPRC5D-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GPRC5D-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GPRC5D-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GPRC5D-AS1 Gene

Proteins for GPRC5D-AS1 Gene

Post-translational modifications for GPRC5D-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GPRC5D-AS1 Gene

Domains & Families for GPRC5D-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GPRC5D-AS1 Gene

Function for GPRC5D-AS1 Gene

Phenotypes From GWAS Catalog for GPRC5D-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GPRC5D-AS1 Gene

Localization for GPRC5D-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GPRC5D-AS1 Gene

Pathways & Interactions for GPRC5D-AS1 Gene

PathCards logo

SuperPathways for GPRC5D-AS1 Gene

No Data Available

Interacting Proteins for GPRC5D-AS1 Gene

Gene Ontology (GO) - Biological Process for GPRC5D-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GPRC5D-AS1 Gene

Drugs & Compounds for GPRC5D-AS1 Gene

No Compound Related Data Available

Transcripts for GPRC5D-AS1 Gene

mRNA/cDNA for GPRC5D-AS1 Gene

(10) Additional mRNA sequences :
(9) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(16) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for GPRC5D-AS1 Gene

No ASD Table

Relevant External Links for GPRC5D-AS1 Gene

GeneLoc Exon Structure for
GPRC5D-AS1
ECgene alternative splicing isoforms for
GPRC5D-AS1

Expression for GPRC5D-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GPRC5D-AS1 Gene

Orthologs for GPRC5D-AS1 Gene

Evolution for GPRC5D-AS1 Gene

ENSEMBL:
Gene Tree for GPRC5D-AS1 (if available)
TreeFam:
Gene Tree for GPRC5D-AS1 (if available)

No data available for Orthologs for GPRC5D-AS1 Gene

Paralogs for GPRC5D-AS1 Gene

No data available for Paralogs for GPRC5D-AS1 Gene

Variants for GPRC5D-AS1 Gene

Sequence variations from dbSNP and Humsavar for GPRC5D-AS1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000005752 -- 12,985,834(+) C/T genic_downstream_transcript_variant, intron_variant
rs1000032634 -- 13,022,311(+) G/A genic_downstream_transcript_variant, non_coding_transcript_variant
rs1000064075 -- 12,943,032(+) C/T genic_upstream_transcript_variant, intron_variant
rs1000167271 -- 12,937,378(+) T/C genic_upstream_transcript_variant, intron_variant
rs1000168465 -- 12,948,551(+) T/A genic_upstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GPRC5D-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2745567 CNV deletion 23290073
nsv832333 CNV gain 17160897

Additional Variant Information for GPRC5D-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GPRC5D-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GPRC5D-AS1 Gene

Disorders for GPRC5D-AS1 Gene

Additional Disease Information for GPRC5D-AS1

No disorders were found for GPRC5D-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GPRC5D-AS1 Gene

Publications for GPRC5D-AS1 Gene

  1. Association between genetic variants in the promoter region of a novel antisense long noncoding RNA RP11-392P7.6 and colorectal cancer risk. (PMID: 28612367) Jin M … Chen K (Environmental and molecular mutagenesis 2017) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  5. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for GPRC5D-AS1 Gene

Sources for GPRC5D-AS1 Gene

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