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Aliases for GPRACR Gene

Subcategory (RNA class) for GPRACR Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for GPRACR Gene

  • GPR107 Adjacent Cis Regulating LncRNA 2 3 5
  • LncGPR107 3

External Ids for GPRACR Gene

Summaries for GPRACR Gene

GeneCards Summary for GPRACR Gene

GPRACR (GPR107 Adjacent Cis Regulating LncRNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for GPRACR Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GPRACR Gene

Genomics for GPRACR Gene

GeneHancer (GH) Regulatory Elements for GPRACR Gene

Promoters and enhancers for GPRACR Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J130143 Promoter/Enhancer 1.1 Ensembl ENCODE dbSUPER 600.7 +0.0 24 0.4 ZIC2 ZBTB33 EGR2 GPRACR PIR32024
GH09J130172 Promoter/Enhancer 2 EPDnew Ensembl ENCODE dbSUPER 12.1 -29.5 -29472 4.6 ZNF652 ZNF148 MYC POLR2A GLIS2 RXRA ZBTB8A ZNF600 PRDM10 ZIC2 NCS1 GPRACR GC09P130226
GH09J130117 Enhancer 1.2 Ensembl ENCODE dbSUPER 12 +25.1 25128 4.2 ZNF121 SP7 ZNF600 PRDM10 ZIC2 ZEB2 ZNF629 PATZ1 SMARCC1 ZFX ENSG00000223188 NCS1 TOR1A GPRACR ENSG00000230684 C9orf78 USP20 FNBP1 GC09P130107 GPR107
GH09J130208 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.3 -65.1 -65137 1.7 CBFA2T2 TRIM24 ZIC2 POLR2A ZNF24 EP300 ZBTB44 ZBTB11 HDAC2 NCOR1 NCS1 GPRACR EXOSC2 GC09P130226
GH09J130111 Enhancer 0.8 ENCODE 11.7 +31.7 31691 1.3 CC2D1A CBFA2T2 ZNF121 TRIM24 EGR1 SMARCA4 GMEB1 DPF2 ATF1 PKNOX1 NCS1 C9orf78 GPRACR ENSG00000230684 USP20 TOR1A GC09P130107 ENSG00000223188 GPR107
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GPRACR on UCSC Golden Path with GeneCards custom track

Genomic Locations for GPRACR Gene

Genomic Locations for GPRACR Gene
chr9:130,140,315-130,144,225
(GRCh38/hg38)
Size:
3,911 bases
Orientation:
Minus strand
chr9:132,902,889-132,906,498
(GRCh37/hg19)
Size:
3,610 bases
Orientation:
Minus strand

Genomic View for GPRACR Gene

Genes around GPRACR on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GPRACR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GPRACR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GPRACR Gene

Proteins for GPRACR Gene

Post-translational modifications for GPRACR Gene

No Post-translational modifications

No data available for DME Specific Peptides for GPRACR Gene

Domains & Families for GPRACR Gene

Gene Families for GPRACR Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with GPRACR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GPRACR Gene

Function for GPRACR Gene

Phenotypes for GPRACR Gene

genes like me logo Genes that share phenotypes with GPRACR: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GPRACR Gene

Localization for GPRACR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GPRACR Gene

Pathways & Interactions for GPRACR Gene

PathCards logo

SuperPathways for GPRACR Gene

No Data Available

Interacting Proteins for GPRACR Gene

Gene Ontology (GO) - Biological Process for GPRACR Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GPRACR Gene

Drugs & Compounds for GPRACR Gene

No Compound Related Data Available

Transcripts for GPRACR Gene

mRNA/cDNA for GPRACR Gene

(2) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for GPRACR Gene

No ASD Table

Relevant External Links for GPRACR Gene

GeneLoc Exon Structure for
GPRACR
ECgene alternative splicing isoforms for
GPRACR

Expression for GPRACR Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GPRACR Gene

Orthologs for GPRACR Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for GPRACR Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 35
  • 84 (a)
OneToOne
Species where no ortholog for GPRACR was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for GPRACR Gene

ENSEMBL:
Gene Tree for GPRACR (if available)
TreeFam:
Gene Tree for GPRACR (if available)

Paralogs for GPRACR Gene

No data available for Paralogs for GPRACR Gene

Variants for GPRACR Gene

Sequence variations from dbSNP and Humsavar for GPRACR Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000577252 -- 130,145,908(-) G/A upstream_transcript_variant
rs1000584950 -- 130,140,365(-) A/G downstream_transcript_variant
rs1001963202 -- 130,145,446(-) T/A/C upstream_transcript_variant
rs1002965060 -- 130,143,986(-) T/A non_coding_transcript_variant
rs1005706367 -- 130,142,033(-) C/T non_coding_transcript_variant

Additional Variant Information for GPRACR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GPRACR

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GPRACR Gene

Disorders for GPRACR Gene

Additional Disease Information for GPRACR

No disorders were found for GPRACR Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GPRACR Gene

Publications for GPRACR Gene

  1. LncGPR107 drives the self-renewal of liver tumor initiating cells and liver tumorigenesis through GPR107-dependent manner. (PMID: 29925408) Huang G … Jiang X (Journal of experimental & clinical cancer research : CR 2018) 2 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for GPRACR Gene

Sources for GPRACR Gene

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