Aliases for GPR176-DT Gene

Data sources for GPR176-DT Gene:

RNA type for GPR176-DT Gene

lncRNA

Aliases for GPR176-DT Gene

External Ids for GPR176-DT Gene

Summaries for GPR176-DT Gene

GeneCards Summary for GPR176-DT Gene

GPR176-DT (GPR176-DT) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for GPR176-DT Gene

Additional gene information for GPR176-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GPR176-DT Gene

Genomics for GPR176-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for GPR176-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J039918 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 -1.8 -1787 4.8 ZNF600 MYC ZNF592 POLR2A NFIC ZIC2 ZBTB10 YY1 MXD4 NONO GPR176 GPR176-DT EIF2AK4 SRP14-AS1 piR-46168 piR-36393-166 FSIP1
GH15J039922 Promoter 0.5 Ensembl 250.7 +1.3 1290 0.2 ZBTB48 ZBTB17 ENSG00000200305 GPR176 GPR176-DT piR-46168 EIF2AK4
GH15J039884 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 11.2 -33.5 -33510 7.4 ZNF654 POLR2A CEBPB CTCF EP300 THAP11 FOXA2 RXRA RAD21 SMC3 GPR176 EIF2AK4 GPR176-DT ENSG00000200305 FSIP1 piR-54764-193 piR-32214-201
GH15J039786 Promoter/Enhancer 1.2 Ensembl ENCODE 10.2 -133.4 -133392 2.8 ZNF654 ZNF600 NFIC CTCF REST CEBPB TRIM22 ZFP64 HOMEZ SIN3A EIF2AK4 ENSG00000200305 GPR176 GPR176-DT FSIP1 ENSG00000259580
GH15J039895 Enhancer 1 Ensembl ENCODE 12 -23.6 -23610 3.6 IKZF1 NCOR1 NFIC ARNT TAL1 NFE2 NCOA2 ATF1 STAT5A MCM7 GPR176 GPR176-DT ENSG00000200305 EIF2AK4 DNAJC17 FSIP1 PAK6 PAK6-AS1 piR-36393-166
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GPR176-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for GPR176-DT Gene

Latest Assembly
chr15:39,921,011-39,926,442
(GRCh38/hg38)
Size:
5,432 bases
Orientation:
Plus strand

Previous Assembly
chr15:40,213,243-40,218,081
(GRCh37/hg19 by Ensembl)
Size:
4,839 bases
Orientation:
Plus strand

Genomic View for GPR176-DT Gene

Genes around GPR176-DT on UCSC Golden Path with GeneCards custom track
GPR176-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
GPR176-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GPR176-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GPR176-DT Gene

Proteins for GPR176-DT Gene

Post-translational modifications for GPR176-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for GPR176-DT Gene

Domains & Families for GPR176-DT Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GPR176-DT Gene

Function for GPR176-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GPR176-DT Gene

Localization for GPR176-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GPR176-DT Gene

Pathways & Interactions for GPR176-DT Gene

PathCards logo

SuperPathways for GPR176-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for GPR176-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for GPR176-DT Gene

Drugs & Compounds for GPR176-DT Gene

No Compound Related Data Available

Transcripts for GPR176-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for GPR176-DT Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000023EC0D_9606 lncRNA 4811 3

Ensembl: ENST00000558675 (view in UCSC) ,

LNCipedia: lnc-EIF2AK4-1:6,

NONCODE: NONHSAT041777.2,

URS00004DDC30_9606 lncRNA 2730 3

Ensembl: ENST00000499797 (view in UCSC) ,

LNCipedia: lnc-EIF2AK4-1:4,

NONCODE: NONHSAT041776.2,

URS00008B2DC5_9606 lncRNA 3704 3

LncBook: HSALNT0218887,

LNCipedia: lnc-EIF2AK4-1:2,

NONCODE: NONHSAT041773.2,

URS00008BD314_9606 lncRNA 3565 2

LNCipedia: lnc-EIF2AK4-1:3,

NONCODE: NONHSAT041775.2,

URS0000D57241_9606 lncRNA 3556 2

LncBook: HSALNT0218888,

LNCipedia: lnc-EIF2AK4-1:10,

GPR176-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for GPR176-DT Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for GPR176-DT Gene

No ASD Table

Relevant External Links for GPR176-DT Gene

GeneLoc Exon Structure for
GPR176-DT

Expression for GPR176-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for GPR176-DT

SOURCE GeneReport for Unigene cluster for GPR176-DT Gene:

Hs.636453
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GPR176-DT Gene

Orthologs for GPR176-DT Gene

Evolution for GPR176-DT Gene

ENSEMBL:
Gene Tree for GPR176-DT (if available)
TreeFam:
Gene Tree for GPR176-DT (if available)
Alliance of Genome Resources:
Additional Orthologs for GPR176-DT

No data available for Orthologs for GPR176-DT Gene

Paralogs for GPR176-DT Gene

No data available for Paralogs for GPR176-DT Gene

Variants for GPR176-DT Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for GPR176-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for GPR176-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GPR176-DT
Leiden Open Variation Database (LOVD)
GPR176-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GPR176-DT Gene

Disorders for GPR176-DT Gene

No disorders were found for GPR176-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GPR176-DT Gene

Publications for GPR176-DT Gene

No publications were found for GPR176-DT Gene.

No data available for Mastermind for GPR176-DT Gene

Products for GPR176-DT Gene

Sources for GPR176-DT Gene