GPR158-AS1 Gene (RNA Gene)

GPR158 Antisense RNA 1

GC10M025158
GIFtS:
11
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Aliases for GPR158-AS1 Gene

Subcategory (RNA class) for GPR158-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for GPR158-AS1 Gene

  • GPR158 Antisense RNA 1 2 3 5
  • GPR158-AS1 2 5 165
  • GPR158 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG005422.2 91

External Ids for GPR158-AS1 Gene

Previous GeneCards Identifiers for GPR158-AS1 Gene

  • GC10M025448

Summaries for GPR158-AS1 Gene

GeneCards Summary for GPR158-AS1 Gene

GPR158-AS1 (GPR158 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for GPR158-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GPR158-AS1 Gene

Genomics for GPR158-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for GPR158-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH10J025174 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 +1.3 1310 1.7 CREB1 PRDM10 ZNF629 REST TFE3 NFKBIZ ZNF692 ZNF7 TARDBP DDX20 GPR158 GPR158-AS1 lnc-ENKUR-4 MYO3A
GH10J025178 Promoter 0.7 EPDnew 600.7 -0.1 -67 0.1 ZBTB48 ZBTB11 ZFHX2 ZNF335 SIN3A GLIS1 KLF16 EZH2 EGR2 KLF14 GPR158 GPR158-AS1 lnc-ENKUR-4 lnc-ENKUR-5 MYO3A
GH10J025176 Promoter 0.7 Ensembl 600.7 +0.2 177 0.2 REST ZBTB20 EZH2 ZBTB26 ZBTB11 ZNF335 SIN3A BACH1 GPR158 GPR158-AS1 lnc-ENKUR-4 MYO3A
GH10J025207 Enhancer 0.2 Ensembl 0.3 -31.2 -31224 0.2 lnc-ENKUR-5 GPR158 GPR158-AS1 MYO3A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GPR158-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for GPR158-AS1 Gene

Genomic Locations for GPR158-AS1 Gene
chr10:25,158,072-25,176,277
(GRCh38/hg38)
Size:
18,206 bases
Orientation:
Minus strand
chr10:25,447,001-25,465,205
(GRCh37/hg19)
Size:
18,205 bases
Orientation:
Minus strand

Genomic View for GPR158-AS1 Gene

Genes around GPR158-AS1 on UCSC Golden Path with GeneCards custom track
GPR158-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
GPR158-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GPR158-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for GPR158-AS1 Gene

Proteins for GPR158-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for GPR158-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GPR158-AS1 Gene

Domains & Families for GPR158-AS1 Gene

Gene Families for GPR158-AS1 Gene

HGNC:
genes like me logo Genes that share domains with GPR158-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GPR158-AS1 Gene

Function for GPR158-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GPR158-AS1 Gene

Localization for GPR158-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GPR158-AS1 Gene

Pathways & Interactions for GPR158-AS1 Gene

PathCards logo

SuperPathways for GPR158-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for GPR158-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for GPR158-AS1 Gene

Drugs & Compounds for GPR158-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for GPR158-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for GPR158-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000853F4_9606 lncRNA 2433 5

HGNC: 44163,

RefSeq: NR_027333,

Ensembl: ENST00000449643 (view in UCSC) ,

LNCipedia: GPR158-AS1:1,

NONCODE: NONHSAT011801.2,

URS00009AF3A6_9606 lncRNA 2433 1

NONCODE: NONHSAT156782.1,

GPR158-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for GPR158-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for GPR158-AS1 Gene

No ASD Table

Relevant External Links for GPR158-AS1 Gene

GeneLoc Exon Structure for
GPR158-AS1

Expression for GPR158-AS1 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for GPR158-AS1 Gene

mRNA expression in normal human tissues for GPR158-AS1 Gene
mRNA expression by GTEx for GPR158-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for GPR158-AS1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x6.6), Brain - Putamen (basal ganglia) (x6.5), Brain - Nucleus accumbens (basal ganglia) (x5.9), Brain - Caudate (basal ganglia) (x5.8), and Brain - Frontal Cortex (BA9) (x4.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for GPR158-AS1

SOURCE GeneReport for Unigene cluster for GPR158-AS1 Gene:

Hs.700407
genes like me logo Genes that share expression patterns with GPR158-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GPR158-AS1 Gene

Orthologs for GPR158-AS1 Gene

Evolution for GPR158-AS1 Gene

ENSEMBL:
Gene Tree for GPR158-AS1 (if available)
TreeFam:
Gene Tree for GPR158-AS1 (if available)

No data available for Orthologs for GPR158-AS1 Gene

Paralogs for GPR158-AS1 Gene

No data available for Paralogs for GPR158-AS1 Gene

Variants for GPR158-AS1 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for GPR158-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for GPR158-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv473651 CNV novel sequence insertion 20440878

Additional Variant Information for GPR158-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GPR158-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for GPR158-AS1 Gene

Disorders for GPR158-AS1 Gene

Additional Disease Information for GPR158-AS1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform

No disorders were found for GPR158-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GPR158-AS1 Gene

Publications for GPR158-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

ExternalLinks

View latest publications for GPR158-AS1 gene in Mastermind

Products for GPR158-AS1 Gene

Sources for GPR158-AS1 Gene