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Aliases for GPR137B Gene

Aliases for GPR137B Gene

  • G Protein-Coupled Receptor 137B 2 3 5
  • Transmembrane 7 Superfamily Member 1 (Upregulated In Kidney) 2 3
  • Transmembrane 7 Superfamily Member 1 Protein 3 4
  • TM7SF1 3 4
  • Integral Membrane Protein GPR137B 3

External Ids for GPR137B Gene

Previous HGNC Symbols for GPR137B Gene

  • TM7SF1

Previous GeneCards Identifiers for GPR137B Gene

  • GC01P232632
  • GC01P234372
  • GC01P236305
  • GC01P206762

Summaries for GPR137B Gene

GeneCards Summary for GPR137B Gene

GPR137B (G Protein-Coupled Receptor 137B) is a Protein Coding gene. An important paralog of this gene is GPR137.

Additional gene information for GPR137B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GPR137B Gene

Genomics for GPR137B Gene

GeneHancer (GH) Regulatory Elements for GPR137B Gene

Promoters and enhancers for GPR137B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I236141 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 561.6 +0.1 83 2.9 ARNT SIN3A FEZF1 ZNF2 GLIS2 ZNF213 ZNF207 ZNF143 ZNF548 RUNX3 GPR137B ENSG00000230325 ENSG00000273058 HEATR1 RPS21P1 ARID4B MTR LDHAP2 TBCE GC01P236268
GH01I236156 Enhancer 1.1 FANTOM5 ENCODE 20.9 +14.2 14229 1.2 HDGF PKNOX1 SMAD1 BMI1 BATF KLF5 IRF4 ATF7 ETV6 IKZF2 GPR137B LGALS8 LYST GC01P236268
GH01I236159 Enhancer 1.3 FANTOM5 Ensembl ENCODE 14.9 +17.6 17618 2 HDGF PKNOX1 RB1 BATF KLF5 IRF4 ZBTB40 ZNF143 ATF7 ETV6 GPR137B LGALS8 LYST GC01P236268
GH01I236162 Enhancer 0.9 ENCODE 19.1 +21.1 21067 1.2 HDGF PKNOX1 FOXA2 SMAD1 ZNF473 ZNF493 ZNF76 BMI1 YBX1 KLF5 ARID4B ENSG00000273058 HEATR1 ENSG00000230325 RPS21P1 MTR GPR137B RPL35P1 GC01P236268
GH01I236151 Enhancer 0.8 ENCODE 17.8 +7.7 7674 0.2 HDGF ZNF473 ZSCAN4 ZNF195 YBX1 GLI4 ZNF155 ZNF213 ZNF207 ZIK1 ENSG00000273058 ARID4B ENSG00000230325 RPS21P1 MTR GGPS1 TBCE HEATR1 GPR137B GC01P236268
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GPR137B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the GPR137B gene promoter:

Genomic Locations for GPR137B Gene

Genomic Locations for GPR137B Gene
chr1:236,142,502-236,221,865
(GRCh38/hg38)
Size:
79,364 bases
Orientation:
Plus strand
chr1:236,305,832-236,385,165
(GRCh37/hg19)

Genomic View for GPR137B Gene

Genes around GPR137B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GPR137B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GPR137B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GPR137B Gene

Proteins for GPR137B Gene

  • Protein details for GPR137B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O60478-G137B_HUMAN
    Recommended name:
    Integral membrane protein GPR137B
    Protein Accession:
    O60478
    Secondary Accessions:
    • Q53EK7
    • Q5TAE6
    • Q6FHI3

    Protein attributes for GPR137B Gene

    Size:
    399 amino acids
    Molecular mass:
    45599 Da
    Quaternary structure:
    No Data Available

neXtProt entry for GPR137B Gene

Post-translational modifications for GPR137B Gene

  • Glycosylation at posLast=2626, isoforms=263, and posLast=275275
  • Modification sites at PhosphoSitePlus

Other Protein References for GPR137B Gene

No data available for DME Specific Peptides for GPR137B Gene

Domains & Families for GPR137B Gene

Gene Families for GPR137B Gene

Human Protein Atlas (HPA):
  • Predicted membrane proteins
  • Transporters

Protein Domains for GPR137B Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

O60478

UniProtKB/Swiss-Prot:

G137B_HUMAN :
  • Belongs to the GPR137 family.
Family:
  • Belongs to the GPR137 family.
genes like me logo Genes that share domains with GPR137B: view

Function for GPR137B Gene

Phenotypes From GWAS Catalog for GPR137B Gene

Phenotypes for GPR137B Gene

genes like me logo Genes that share phenotypes with GPR137B: view

Animal Model Products

CRISPR Products

miRNA for GPR137B Gene

miRTarBase miRNAs that target GPR137B

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GPR137B Gene

Localization for GPR137B Gene

Subcellular locations from UniProtKB/Swiss-Prot for GPR137B Gene

Lysosome membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for GPR137B gene
Compartment Confidence
plasma membrane 5
lysosome 3

Gene Ontology (GO) - Cellular Components for GPR137B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005765 lysosomal membrane IEA --
GO:0005887 integral component of plasma membrane TAS 9521871
GO:0016020 membrane TAS,IEA 9521871
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with GPR137B: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for GPR137B Gene

Pathways & Interactions for GPR137B Gene

SuperPathways for GPR137B Gene

No Data Available

Gene Ontology (GO) - Biological Process for GPR137B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GPR137B Gene

Drugs & Compounds for GPR137B Gene

No Compound Related Data Available

Transcripts for GPR137B Gene

Unigene Clusters for GPR137B Gene

G protein-coupled receptor 137B:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GPR137B Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b · 11c · 11d
SP1: - - - -
SP2: - - -
SP3: -
SP4:
SP5: -
SP6:

Relevant External Links for GPR137B Gene

GeneLoc Exon Structure for
GPR137B
ECgene alternative splicing isoforms for
GPR137B

Expression for GPR137B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GPR137B Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for GPR137B Gene

This gene is overexpressed in Retina (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for GPR137B Gene



Protein tissue co-expression partners for GPR137B Gene

NURSA nuclear receptor signaling pathways regulating expression of GPR137B Gene:

GPR137B

SOURCE GeneReport for Unigene cluster for GPR137B Gene:

Hs.498160

mRNA Expression by UniProt/SwissProt for GPR137B Gene:

O60478-G137B_HUMAN
Tissue specificity: Expressed in kidney, heart, brain and placenta.

Evidence on tissue expression from TISSUES for GPR137B Gene

  • Kidney(4.4)
  • Skin(4.4)
  • Spleen(4.2)
  • Nervous system(3.5)
genes like me logo Genes that share expression patterns with GPR137B: view

No data available for mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for GPR137B Gene

Orthologs for GPR137B Gene

This gene was present in the common ancestor of chordates.

Orthologs for GPR137B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia GPR137B 33 34
  • 100 (n)
cow
(Bos Taurus)
Mammalia GPR137B 33 34
  • 92.36 (n)
dog
(Canis familiaris)
Mammalia GPR137B 33 34
  • 91.92 (n)
mouse
(Mus musculus)
Mammalia Gpr137b 33 16 34
  • 90.28 (n)
oppossum
(Monodelphis domestica)
Mammalia GPR137B 34
  • 87 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia GPR137B 34
  • 79 (a)
OneToOne
chicken
(Gallus gallus)
Aves GPR137B 33 34
  • 78.51 (n)
lizard
(Anolis carolinensis)
Reptilia GPR137B 34
  • 80 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia gpr137b 33
  • 72.83 (n)
Str.3726 33
zebrafish
(Danio rerio)
Actinopterygii GPR137B (2 of 2) 34
  • 71 (a)
OneToMany
LOC100001171 33
  • 70.2 (n)
GPR137B (1 of 2) 34
  • 60 (a)
OneToMany
wufi39g02 33
Species where no ortholog for GPR137B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for GPR137B Gene

ENSEMBL:
Gene Tree for GPR137B (if available)
TreeFam:
Gene Tree for GPR137B (if available)

Paralogs for GPR137B Gene

Paralogs for GPR137B Gene

(4) SIMAP similar genes for GPR137B Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with GPR137B: view

Variants for GPR137B Gene

Sequence variations from dbSNP and Humsavar for GPR137B Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000033289 -- 236,196,529(+) T/C intron_variant
rs1000039683 -- 236,188,531(+) G/A/T intron_variant
rs1000051492 -- 236,157,771(+) A/C intron_variant
rs1000107230 -- 236,157,575(+) G/A intron_variant
rs1000195671 -- 236,181,252(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GPR137B Gene

Variant ID Type Subtype PubMed ID
dgv156e212 CNV loss 25503493
dgv590n100 CNV gain 25217958
esv1123909 CNV insertion 17803354
esv28317 CNV loss 19812545
esv3345110 CNV duplication 20981092
esv3578490 CNV loss 25503493
esv3589211 CNV loss 21293372
nsv1005877 CNV gain 25217958
nsv1012436 CNV loss 25217958
nsv468428 CNV loss 19166990
nsv468439 CNV loss 19166990
nsv549394 CNV gain 21841781
nsv549397 CNV loss 21841781
nsv549398 CNV loss 21841781
nsv549399 CNV gain 21841781
nsv827476 CNV gain 20364138
nsv832969 CNV gain 17160897
nsv953998 CNV deletion 24416366

Variation tolerance for GPR137B Gene

Residual Variation Intolerance Score: 48.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.27; 25.32% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for GPR137B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GPR137B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for GPR137B Gene

Disorders for GPR137B Gene

Additional Disease Information for GPR137B

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for GPR137B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GPR137B Gene

Publications for GPR137B Gene

  1. Cloning and characterization of a novel gene (TM7SF1) encoding a putative seven-pass transmembrane protein that is upregulated during kidney development. (PMID: 9521871) Spangenberg C … Löbbert RW (Genomics 1998) 2 3 4 58
  2. Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia. (PMID: 21107309) McClay JL … van den Oord EJ (Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology 2011) 3 44 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  4. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin EL … Gygi SP (Cell 2015) 3 58

Products for GPR137B Gene

Sources for GPR137B Gene

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