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Aliases for GPR1-AS Gene

Subcategory (RNA class) for GPR1-AS Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for GPR1-AS Gene

  • GPR1 Antisense RNA 2 3 5
  • G Protein-Coupled Receptor 1 Antisense RNA 2 3
  • GPR1 Antisense RNA 1 2 3
  • GPR1-AS1 3
  • GPR1AS 3

External Ids for GPR1-AS Gene

Previous HGNC Symbols for GPR1-AS Gene

  • GPR1-AS1

Previous GeneCards Identifiers for GPR1-AS Gene

  • GC02U902622

Summaries for GPR1-AS Gene

Entrez Gene Summary for GPR1-AS Gene

  • This gene is thought to produce a non-coding RNA. It is situated adjacent to a differentially methylated region (DMR) and is imprinted and paternally expressed in the placenta. [provided by RefSeq, Nov 2015]

GeneCards Summary for GPR1-AS Gene

GPR1-AS (GPR1 Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for GPR1-AS Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GPR1-AS Gene

Genomics for GPR1-AS Gene

GeneHancer (GH) Regulatory Elements for GPR1-AS Gene

Promoters and enhancers for GPR1-AS Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J206200 Enhancer 0.7 Ensembl ENCODE 600.7 -1.5 -1494 2 CEBPG CEBPA CREM RFX5 MAFK GPR1-AS GPR1 PIR49139
GH02J206211 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 0.4 +9.3 9338 2.7 ZNF384 SP7 KLF14 MZF1 FOSL2 PKNOX1 ZNF488 ZBTB8A ZNF600 PRDM10 GPR1 GPR1-AS
GH02J206198 Enhancer 0.6 Ensembl ENCODE 0.7 -4.5 -4535 1.3 CEBPB JUND HLF GPR1 GPR1-AS PIR49139
GH02J206229 Enhancer 1.1 Ensembl ENCODE 0.3 +26.9 26906 1.4 ZNF121 ZNF384 ZSCAN21 MAFK SP7 MZF1 GLIS2 PKNOX1 ZNF488 ZBTB8A ZDBF2 RN7SKP200 ENSG00000159186 GPR1-AS
GH02J206219 Promoter 0.7 Ensembl 0.4 +15.8 15825 0.4 PRDM6 MYC MAX GPR1 RN7SKP200 GPR1-AS
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GPR1-AS on UCSC Golden Path with GeneCards custom track

Genomic Locations for GPR1-AS Gene

Genomic Locations for GPR1-AS Gene
chr2:206,203,376-206,266,243
(GRCh38/hg38)
Size:
62,868 bases
Orientation:
Plus strand

Genomic View for GPR1-AS Gene

Genes around GPR1-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GPR1-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GPR1-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GPR1-AS Gene

Proteins for GPR1-AS Gene

Post-translational modifications for GPR1-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for GPR1-AS Gene

Domains & Families for GPR1-AS Gene

Gene Families for GPR1-AS Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with GPR1-AS: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GPR1-AS Gene

Function for GPR1-AS Gene

Phenotypes From GWAS Catalog for GPR1-AS Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GPR1-AS Gene

Localization for GPR1-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GPR1-AS Gene

Pathways & Interactions for GPR1-AS Gene

PathCards logo

SuperPathways for GPR1-AS Gene

No Data Available

Interacting Proteins for GPR1-AS Gene

Gene Ontology (GO) - Biological Process for GPR1-AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GPR1-AS Gene

Drugs & Compounds for GPR1-AS Gene

No Compound Related Data Available

Transcripts for GPR1-AS Gene

mRNA/cDNA for GPR1-AS Gene

(7) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for GPR1-AS Gene

No ASD Table

Relevant External Links for GPR1-AS Gene

GeneLoc Exon Structure for
GPR1-AS
ECgene alternative splicing isoforms for
GPR1-AS

Expression for GPR1-AS Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GPR1-AS Gene

Orthologs for GPR1-AS Gene

Evolution for GPR1-AS Gene

ENSEMBL:
Gene Tree for GPR1-AS (if available)
TreeFam:
Gene Tree for GPR1-AS (if available)

No data available for Orthologs for GPR1-AS Gene

Paralogs for GPR1-AS Gene

No data available for Paralogs for GPR1-AS Gene

Variants for GPR1-AS Gene

Sequence variations from dbSNP and Humsavar for GPR1-AS Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000019280 -- 206,231,601(+) G/A intron_variant
rs1000096509 -- 206,233,395(+) A/G intron_variant
rs1000123649 -- 206,266,468(+) T/C downstream_transcript_variant
rs1000128021 -- 206,227,142(+) C/T intron_variant
rs1000192884 -- 206,264,933(+) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for GPR1-AS Gene

Variant ID Type Subtype PubMed ID
nsv3126 CNV insertion 18451855
nsv479176 CNV novel sequence insertion 20440878
nsv479844 CNV novel sequence insertion 20440878
nsv528596 CNV loss 19592680

Additional Variant Information for GPR1-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GPR1-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GPR1-AS Gene

Disorders for GPR1-AS Gene

Additional Disease Information for GPR1-AS

No disorders were found for GPR1-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GPR1-AS Gene

Publications for GPR1-AS Gene

  1. Epigenetic and transcriptional features of the novel human imprinted lncRNA GPR1AS suggest it is a functional ortholog to mouse Zdbf2linc. (PMID: 23764515) Kobayashi H … Kono T (Epigenetics 2013) 2 3 58
  2. Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder. (PMID: 22688191) Bergen SE … Sullivan PF (Molecular psychiatry 2012) 3 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  4. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang AG … Kim NS (Biochemical and biophysical research communications 2006) 3 58
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for GPR1-AS Gene

Sources for GPR1-AS Gene

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