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Aliases for GPN3P1 Gene

Subcategory (RNA class) for GPN3P1 Gene

lncRNA

Aliases for GPN3P1 Gene

  • GPN-Loop GTPase 3 Pseudogene 1 2 3 5

External Ids for GPN3P1 Gene

ORGUL Members for GPN3P1 Gene

Previous GeneCards Identifiers for GPN3P1 Gene

  • GC10M025938

Summaries for GPN3P1 Gene

GeneCards Summary for GPN3P1 Gene

GPN3P1 (GPN-Loop GTPase 3 Pseudogene 1) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for GPN3P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GPN3P1 Gene

Genomics for GPN3P1 Gene

GeneHancer (GH) Regulatory Elements for GPN3P1 Gene

Promoters and enhancers for GPN3P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J025637 Enhancer 0.4 Ensembl 0.4 +10.8 10826 0.2 SCRT2 FOS ZNF362 GPN3P1 RN7SKP220
GH10J025556 Enhancer 0.8 Ensembl ENCODE 0.2 +91.4 91380 1.4 EGR1 SMARCA4 CTCF OSR2 ZSCAN29 NFIC ZNF366 JUN ZNF143 ATF7 GPN3P1 RN7SKP220 GPR158
GH10J025465 Promoter/Enhancer 1.3 Ensembl ENCODE 0.1 +181.9 181903 1.2 CC2D1A ZNF639 ZNF512 PHF21A GTF2E2 LEF1 HDAC1 ETV6 NR2C1 IRF2 RN7SKP220 GPN3P1 GPR158
GH10J025492 Enhancer 0.9 ENCODE 0.1 +154.9 154907 2.4 SP1 CC2D1A ZKSCAN8 CBFA2T2 MLLT1 NCOA6 TRIM24 EGR1 SMARCA4 MTA1 RN7SKP220 GPN3P1 GPR158
GH10J025523 Enhancer 0.5 Ensembl 0.1 +124.8 124804 0.2 CTCF ZNF654 ZNF143 NR2F6 RAD21 NR2F1 RN7SKP220 GPN3P1 GPR158
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GPN3P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GPN3P1 Gene

Genomic Locations for GPN3P1 Gene
chr10:25,647,077-25,648,104
(GRCh38/hg38)
Size:
1,028 bases
Orientation:
Minus strand
chr10:25,936,006-25,937,033
(GRCh37/hg19)
Size:
1,028 bases
Orientation:
Minus strand

Genomic View for GPN3P1 Gene

Genes around GPN3P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GPN3P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GPN3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GPN3P1 Gene

Proteins for GPN3P1 Gene

Post-translational modifications for GPN3P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GPN3P1 Gene

Domains & Families for GPN3P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GPN3P1 Gene

Function for GPN3P1 Gene

Phenotypes From GWAS Catalog for GPN3P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GPN3P1 Gene

Localization for GPN3P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GPN3P1 Gene

Pathways & Interactions for GPN3P1 Gene

PathCards logo

SuperPathways for GPN3P1 Gene

No Data Available

Interacting Proteins for GPN3P1 Gene

Gene Ontology (GO) - Biological Process for GPN3P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GPN3P1 Gene

Drugs & Compounds for GPN3P1 Gene

No Compound Related Data Available

Transcripts for GPN3P1 Gene

mRNA/cDNA for GPN3P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for GPN3P1 Gene

No ASD Table

Relevant External Links for GPN3P1 Gene

GeneLoc Exon Structure for
GPN3P1
ECgene alternative splicing isoforms for
GPN3P1

Expression for GPN3P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GPN3P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of GPN3P1 Gene:

GPN3P1
genes like me logo Genes that share expression patterns with GPN3P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GPN3P1 Gene

Orthologs for GPN3P1 Gene

Evolution for GPN3P1 Gene

ENSEMBL:
Gene Tree for GPN3P1 (if available)
TreeFam:
Gene Tree for GPN3P1 (if available)

No data available for Orthologs for GPN3P1 Gene

Paralogs for GPN3P1 Gene

No data available for Paralogs for GPN3P1 Gene

Variants for GPN3P1 Gene

Additional Variant Information for GPN3P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GPN3P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GPN3P1 Gene

Disorders for GPN3P1 Gene

No disorders were found for GPN3P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GPN3P1 Gene

Publications for GPN3P1 Gene

No publications were found for GPN3P1 Gene.

Products for GPN3P1 Gene

Sources for GPN3P1 Gene

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