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Aliases for GPC6-AS2 Gene

Subcategory (RNA class) for GPC6-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for GPC6-AS2 Gene

  • GPC6 Antisense RNA 2 2 3 5
  • GPC6 Antisense RNA 2 (Non-Protein Coding) 2 3

External Ids for GPC6-AS2 Gene

Previous GeneCards Identifiers for GPC6-AS2 Gene

  • GC00U933726
  • GC13M094472

Summaries for GPC6-AS2 Gene

GeneCards Summary for GPC6-AS2 Gene

GPC6-AS2 (GPC6 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with GPC6-AS2 include Omodysplasia 1 and Omodysplasia.

Additional gene information for GPC6-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GPC6-AS2 Gene

Genomics for GPC6-AS2 Gene

GeneHancer (GH) Regulatory Elements for GPC6-AS2 Gene

Promoters and enhancers for GPC6-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J093859 Enhancer 0.4 ENCODE 600.7 -1.5 -1504 0.5 FOS ZFHX2 GPC6-AS2 GC13M094026 GPC6
GH13J093809 Enhancer 0.4 Ensembl 11.6 +47.8 47772 2.6 SOX13 SOX5 GPC6 GPC6-AS2 GC13P093635
GH13J093814 Enhancer 0.2 Ensembl 11.6 +43.7 43672 0.4 GPC6-AS2 GC13P093635 GPC6
GH13J093861 Enhancer 0.6 Ensembl ENCODE 0.7 -3.6 -3628 1 FOS FOSL2 JUND GPC6 GPC6-AS2 GC13M094026
GH13J093846 Enhancer 0.7 Ensembl ENCODE 0.4 +11.0 11022 1 CEBPA CEBPB FOS JUNB FOSL2 BATF HOMEZ GPC6 GPC6-AS2 GC13P093635
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GPC6-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GPC6-AS2 Gene

Genomic Locations for GPC6-AS2 Gene
chr13:93,818,424-93,858,473
(GRCh38/hg38)
Size:
40,050 bases
Orientation:
Minus strand
chr13:94,470,677-94,488,397
(GRCh37/hg19)
Size:
17,721 bases
Orientation:
Minus strand

Genomic View for GPC6-AS2 Gene

Genes around GPC6-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GPC6-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GPC6-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GPC6-AS2 Gene

Proteins for GPC6-AS2 Gene

Post-translational modifications for GPC6-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GPC6-AS2 Gene

Domains & Families for GPC6-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GPC6-AS2 Gene

Function for GPC6-AS2 Gene

Phenotypes From GWAS Catalog for GPC6-AS2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GPC6-AS2 Gene

Localization for GPC6-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GPC6-AS2 Gene

Pathways & Interactions for GPC6-AS2 Gene

PathCards logo

SuperPathways for GPC6-AS2 Gene

No Data Available

Interacting Proteins for GPC6-AS2 Gene

Gene Ontology (GO) - Biological Process for GPC6-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GPC6-AS2 Gene

Drugs & Compounds for GPC6-AS2 Gene

No Compound Related Data Available

Transcripts for GPC6-AS2 Gene

mRNA/cDNA for GPC6-AS2 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Unigene Clusters for GPC6-AS2 Gene

GPC6 antisense RNA 2:
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for GPC6-AS2 Gene

No ASD Table

Relevant External Links for GPC6-AS2 Gene

GeneLoc Exon Structure for
GPC6-AS2
ECgene alternative splicing isoforms for
GPC6-AS2

Expression for GPC6-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GPC6-AS2 Gene

SOURCE GeneReport for Unigene cluster for GPC6-AS2 Gene:

Hs.615939
genes like me logo Genes that share expression patterns with GPC6-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GPC6-AS2 Gene

Orthologs for GPC6-AS2 Gene

Evolution for GPC6-AS2 Gene

ENSEMBL:
Gene Tree for GPC6-AS2 (if available)
TreeFam:
Gene Tree for GPC6-AS2 (if available)

No data available for Orthologs for GPC6-AS2 Gene

Paralogs for GPC6-AS2 Gene

No data available for Paralogs for GPC6-AS2 Gene

Variants for GPC6-AS2 Gene

Sequence variations from dbSNP and Humsavar for GPC6-AS2 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs121908440 pathogenic, Omodysplasia 1 93,830,534(-) C/T intron_variant
rs369467067 uncertain-significance, Omodysplasia 93,830,419(-) C/A/T intron_variant
rs377404400 uncertain-significance, not specified 93,830,148(-) C/G intron_variant
rs1000005003 -- 93,848,799(-) C/T intron_variant
rs1000080027 -- 93,845,694(-) G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GPC6-AS2 Gene

Variant ID Type Subtype PubMed ID
esv3892424 CNV gain 25118596
nsv507725 OTHER sequence alteration 20534489
nsv832684 CNV loss 17160897

Additional Variant Information for GPC6-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GPC6-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GPC6-AS2 Gene

Disorders for GPC6-AS2 Gene

MalaCards: The human disease database

(2) MalaCards diseases for GPC6-AS2 Gene - From: GeneCards

Disorder Aliases PubMed IDs
omodysplasia 1
  • omod1
omodysplasia
  • omodysplasia 2
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for GPC6-AS2

genes like me logo Genes that share disorders with GPC6-AS2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for GPC6-AS2 Gene

Publications for GPC6-AS2 Gene

No publications were found for GPC6-AS2 Gene.

Products for GPC6-AS2 Gene

Sources for GPC6-AS2 Gene

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