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Aliases for GPC6-AS1 Gene

Subcategory (RNA class) for GPC6-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for GPC6-AS1 Gene

  • GPC6 Antisense RNA 1 2 3 5
  • GPC6 Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for GPC6-AS1 Gene

Previous GeneCards Identifiers for GPC6-AS1 Gene

  • GC00U933257
  • GC13M094807

Summaries for GPC6-AS1 Gene

GeneCards Summary for GPC6-AS1 Gene

GPC6-AS1 (GPC6 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for GPC6-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GPC6-AS1 Gene

Genomics for GPC6-AS1 Gene

GeneHancer (GH) Regulatory Elements for GPC6-AS1 Gene

Promoters and enhancers for GPC6-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J094187 Enhancer 0.2 Ensembl 600.7 -0.7 -710 1.8 GPC6-AS1 GC13P094200 GPC6
GH13J094308 Enhancer 1 Ensembl ENCODE dbSUPER 10.1 -123.4 -123410 5.6 ZBTB33 POLR2A EZH2 RUNX3 FOS JUND JUN REST HLF GPC6-AS1 GC13P094348 GC13P094200
GH13J094157 Enhancer 0.8 Ensembl ENCODE 11 +29.9 29890 1.4 SP1 RXRA JUND ATF3 YY1 ZBTB33 NR2F2 RAD21 HNF4A MAX GPC6-AS1 GC13P094152 GPC6
GH13J094233 Enhancer 0.7 Ensembl ENCODE 10.7 -45.6 -45610 1.6 PKNOX1 FOS FOSL2 JUND JUN CTBP1 GPC6-AS1 GC13P094200 GC13P094348
GH13J094238 Enhancer 0.7 FANTOM5 ENCODE 11 -51.5 -51488 1.5 RUNX3 FOS BATF GPC6-AS1 GC13P094200 GC13P094348
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GPC6-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GPC6-AS1 Gene

Genomic Locations for GPC6-AS1 Gene
chr13:94,154,193-94,187,991
(GRCh38/hg38)
Size:
33,799 bases
Orientation:
Minus strand
chr13:94,806,447-94,840,245
(GRCh37/hg19)
Size:
33,799 bases
Orientation:
Minus strand

Genomic View for GPC6-AS1 Gene

Genes around GPC6-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GPC6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GPC6-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GPC6-AS1 Gene

Proteins for GPC6-AS1 Gene

Post-translational modifications for GPC6-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GPC6-AS1 Gene

Domains & Families for GPC6-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GPC6-AS1 Gene

Function for GPC6-AS1 Gene

Phenotypes From GWAS Catalog for GPC6-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GPC6-AS1 Gene

Localization for GPC6-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GPC6-AS1 Gene

Pathways & Interactions for GPC6-AS1 Gene

PathCards logo

SuperPathways for GPC6-AS1 Gene

No Data Available

Interacting Proteins for GPC6-AS1 Gene

Gene Ontology (GO) - Biological Process for GPC6-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GPC6-AS1 Gene

Drugs & Compounds for GPC6-AS1 Gene

No Compound Related Data Available

Transcripts for GPC6-AS1 Gene

mRNA/cDNA for GPC6-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for GPC6-AS1 Gene

No ASD Table

Relevant External Links for GPC6-AS1 Gene

GeneLoc Exon Structure for
GPC6-AS1
ECgene alternative splicing isoforms for
GPC6-AS1

Expression for GPC6-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GPC6-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for GPC6-AS1 Gene

This gene is overexpressed in Testis (x37.4) and Liver (x7.6).
genes like me logo Genes that share expression patterns with GPC6-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GPC6-AS1 Gene

Orthologs for GPC6-AS1 Gene

Evolution for GPC6-AS1 Gene

ENSEMBL:
Gene Tree for GPC6-AS1 (if available)
TreeFam:
Gene Tree for GPC6-AS1 (if available)

No data available for Orthologs for GPC6-AS1 Gene

Paralogs for GPC6-AS1 Gene

No data available for Paralogs for GPC6-AS1 Gene

Variants for GPC6-AS1 Gene

Sequence variations from dbSNP and Humsavar for GPC6-AS1 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000043069 -- 94,172,559(-) T/C intron_variant
rs1000059940 -- 94,185,736(-) G/C intron_variant
rs1000132991 -- 94,185,909(-) A/G intron_variant
rs1000152433 -- 94,172,824(-) T/A intron_variant
rs1000196065 -- 94,164,125(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GPC6-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2677275 CNV deletion 23128226
esv3633227 CNV loss 21293372
esv3892424 CNV gain 25118596
nsv1051276 CNV loss 25217958
nsv526048 CNV loss 19592680
nsv562754 CNV loss 21841781

Additional Variant Information for GPC6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GPC6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GPC6-AS1 Gene

Disorders for GPC6-AS1 Gene

Additional Disease Information for GPC6-AS1

No disorders were found for GPC6-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GPC6-AS1 Gene

Publications for GPC6-AS1 Gene

No publications were found for GPC6-AS1 Gene.

Products for GPC6-AS1 Gene

Sources for GPC6-AS1 Gene

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