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Aliases for GPC5-IT1 Gene

Subcategory (RNA class) for GPC5-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for GPC5-IT1 Gene

  • GPC5 Intronic Transcript 1 2 3 5
  • GPC5 Intronic Transcript 1 (Non-Protein Coding) 2 3

External Ids for GPC5-IT1 Gene

Previous GeneCards Identifiers for GPC5-IT1 Gene

  • GC00U933262
  • GC13P093137

Summaries for GPC5-IT1 Gene

GeneCards Summary for GPC5-IT1 Gene

GPC5-IT1 (GPC5 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for GPC5-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GPC5-IT1 Gene

Genomics for GPC5-IT1 Gene

GeneHancer (GH) Regulatory Elements for GPC5-IT1 Gene

Promoters and enhancers for GPC5-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J092559 Enhancer 0.4 Ensembl 7.7 +74.9 74895 1 REST ZNF507 GPC5-IT1 GC13M092516 GC13P092601
GH13J092479 Enhancer 0.3 ENCODE 7.5 -4.2 -4239 1.6 FOXA2 GPC5-IT1 ENSG00000283097
GH13J092500 Enhancer 0.4 Ensembl 5.1 +15.9 15895 1 PKNOX1 FOXA1 CTBP1 GPC5-IT1 MIR548AS GC13M092516
GH13J092548 Enhancer 0.3 ENCODE 6.7 +65.0 65036 1.8 ZNF507 GPC5-IT1 GC13M092516 GC13P092601
GH13J092513 Enhancer 0.3 Ensembl 4.8 +28.5 28495 0.2 BRF2 GPC5-IT1 GC13M092516 MIR548AS
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GPC5-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GPC5-IT1 Gene

Genomic Locations for GPC5-IT1 Gene
chr13:92,484,606-92,510,094
(GRCh38/hg38)
Size:
25,489 bases
Orientation:
Plus strand
chr13:93,136,859-93,162,347
(GRCh37/hg19)
Size:
25,489 bases
Orientation:
Plus strand

Genomic View for GPC5-IT1 Gene

Genes around GPC5-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GPC5-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GPC5-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for GPC5-IT1 Gene

Proteins for GPC5-IT1 Gene

Post-translational modifications for GPC5-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GPC5-IT1 Gene

Domains & Families for GPC5-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GPC5-IT1 Gene

Function for GPC5-IT1 Gene

Phenotypes From GWAS Catalog for GPC5-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GPC5-IT1 Gene

Localization for GPC5-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GPC5-IT1 Gene

Pathways & Interactions for GPC5-IT1 Gene

PathCards logo

SuperPathways for GPC5-IT1 Gene

No Data Available

Interacting Proteins for GPC5-IT1 Gene

Gene Ontology (GO) - Biological Process for GPC5-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GPC5-IT1 Gene

Drugs & Compounds for GPC5-IT1 Gene

No Compound Related Data Available

Transcripts for GPC5-IT1 Gene

mRNA/cDNA for GPC5-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for GPC5-IT1 Gene

No ASD Table

Relevant External Links for GPC5-IT1 Gene

GeneLoc Exon Structure for
GPC5-IT1
ECgene alternative splicing isoforms for
GPC5-IT1

Expression for GPC5-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GPC5-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for GPC5-IT1 Gene

This gene is overexpressed in Testis (x29.9).
genes like me logo Genes that share expression patterns with GPC5-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GPC5-IT1 Gene

Orthologs for GPC5-IT1 Gene

Evolution for GPC5-IT1 Gene

ENSEMBL:
Gene Tree for GPC5-IT1 (if available)
TreeFam:
Gene Tree for GPC5-IT1 (if available)

No data available for Orthologs for GPC5-IT1 Gene

Paralogs for GPC5-IT1 Gene

No data available for Paralogs for GPC5-IT1 Gene

Variants for GPC5-IT1 Gene

Additional Variant Information for GPC5-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GPC5-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GPC5-IT1 Gene

Disorders for GPC5-IT1 Gene

No disorders were found for GPC5-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GPC5-IT1 Gene

Publications for GPC5-IT1 Gene

No publications were found for GPC5-IT1 Gene.

Products for GPC5-IT1 Gene

Sources for GPC5-IT1 Gene

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