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Aliases for GPC5-AS2 Gene

Subcategory (RNA class) for GPC5-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for GPC5-AS2 Gene

  • GPC5 Antisense RNA 2 2 3 5
  • GPC5 Antisense RNA 2 (Non-Protein Coding) 2 3

External Ids for GPC5-AS2 Gene

Previous GeneCards Identifiers for GPC5-AS2 Gene

  • GC00U933546
  • GC13M092993

Summaries for GPC5-AS2 Gene

GeneCards Summary for GPC5-AS2 Gene

GPC5-AS2 (GPC5 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for GPC5-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GPC5-AS2 Gene

Genomics for GPC5-AS2 Gene

GeneHancer (GH) Regulatory Elements for GPC5-AS2 Gene

Promoters and enhancers for GPC5-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J092345 Enhancer 0.4 Ensembl 0.4 +6.0 6006 0.8 ZNF507 TEAD2 GPC5-AS2 ENSG00000282865 GPC5
GH13J092349 Enhancer 0.2 FANTOM5 0.7 +2.9 2929 0.4 GPC5-AS2 ENSG00000282865 GPC5
GH13J092317 Enhancer 0.3 Ensembl 0.3 +34.9 34906 0.2 JUND GPC5-AS2 ENSG00000282865 GPC5
GH13J092396 Enhancer 0.3 ENCODE 0.3 -44.5 -44536 0.2 KLF1 GC13P092408 GPC5-AS2 GPC5
GH13J092300 Enhancer 0.3 Ensembl 0.2 +52.0 52006 0.4 PHF21A GPC5-AS2 ENSG00000282865 GPC5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GPC5-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GPC5-AS2 Gene

Genomic Locations for GPC5-AS2 Gene
chr13:92,339,794-92,352,207
(GRCh38/hg38)
Size:
12,414 bases
Orientation:
Minus strand
chr13:92,992,047-92,992,856
(GRCh37/hg19)
Size:
810 bases
Orientation:
Minus strand

Genomic View for GPC5-AS2 Gene

Genes around GPC5-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GPC5-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GPC5-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GPC5-AS2 Gene

Proteins for GPC5-AS2 Gene

Post-translational modifications for GPC5-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GPC5-AS2 Gene

Domains & Families for GPC5-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GPC5-AS2 Gene

Function for GPC5-AS2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GPC5-AS2 Gene

Localization for GPC5-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GPC5-AS2 Gene

Pathways & Interactions for GPC5-AS2 Gene

PathCards logo

SuperPathways for GPC5-AS2 Gene

No Data Available

Interacting Proteins for GPC5-AS2 Gene

Gene Ontology (GO) - Biological Process for GPC5-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GPC5-AS2 Gene

Drugs & Compounds for GPC5-AS2 Gene

No Compound Related Data Available

Transcripts for GPC5-AS2 Gene

mRNA/cDNA for GPC5-AS2 Gene

(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for GPC5-AS2 Gene

No ASD Table

Relevant External Links for GPC5-AS2 Gene

GeneLoc Exon Structure for
GPC5-AS2
ECgene alternative splicing isoforms for
GPC5-AS2

Expression for GPC5-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GPC5-AS2 Gene

genes like me logo Genes that share expression patterns with GPC5-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GPC5-AS2 Gene

Orthologs for GPC5-AS2 Gene

Evolution for GPC5-AS2 Gene

ENSEMBL:
Gene Tree for GPC5-AS2 (if available)
TreeFam:
Gene Tree for GPC5-AS2 (if available)

No data available for Orthologs for GPC5-AS2 Gene

Paralogs for GPC5-AS2 Gene

No data available for Paralogs for GPC5-AS2 Gene

Variants for GPC5-AS2 Gene

Sequence variations from dbSNP and Humsavar for GPC5-AS2 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000269360 -- 92,347,322(-) G/A intron_variant
rs1000387099 -- 92,342,133(-) A/G intron_variant
rs1001003041 -- 92,339,855(-) T/C non_coding_transcript_variant
rs1001505491 -- 92,339,615(-) C/A/T downstream_transcript_variant
rs1001689596 -- 92,342,471(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for GPC5-AS2 Gene

Variant ID Type Subtype PubMed ID
dgv1730n100 CNV gain 25217958
esv2668276 CNV deletion 23128226
esv2747812 CNV deletion 23290073
esv2747813 CNV deletion 23290073
esv3550890 CNV deletion 23714750
esv3550891 CNV deletion 23714750
esv3582694 CNV gain 25503493
nsv1122 CNV insertion 18451855
nsv456068 CNV gain 19166990
nsv562727 CNV gain 21841781
nsv958151 CNV deletion 24416366

Additional Variant Information for GPC5-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GPC5-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GPC5-AS2 Gene

Disorders for GPC5-AS2 Gene

Additional Disease Information for GPC5-AS2

No disorders were found for GPC5-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GPC5-AS2 Gene

Publications for GPC5-AS2 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 58

No data available for External Links for GPC5-AS2 Gene

Products for GPC5-AS2 Gene

Sources for GPC5-AS2 Gene

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