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Aliases for GPC3-AS1 Gene

Subcategory (RNA class) for GPC3-AS1 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for GPC3-AS1 Gene

  • GPC3 Antisense RNA 1 2 3 5
  • Glypican 3 Antisense Transcript 1 3

External Ids for GPC3-AS1 Gene

Previous GeneCards Identifiers for GPC3-AS1 Gene

  • GC0XU902370

Summaries for GPC3-AS1 Gene

GeneCards Summary for GPC3-AS1 Gene

GPC3-AS1 (GPC3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with GPC3-AS1 include Hepatocellular Carcinoma.

Additional gene information for GPC3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GPC3-AS1 Gene

Genomics for GPC3-AS1 Gene

GeneHancer (GH) Regulatory Elements for GPC3-AS1 Gene

Promoters and enhancers for GPC3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ133978 Promoter/Enhancer 2 EPDnew Ensembl ENCODE dbSUPER 0.2 +85.4 85415 8.3 POLR2A MAFK YY1 GLIS2 PKNOX1 ZNF600 CEBPA PATZ1 ZNF692 ZNF501 GPC3 GPC3-AS1
GH0XJ133914 Enhancer 0.6 Ensembl ENCODE 0.4 +15.8 15846 3 PKNOX1 ZBTB48 PRDM6 GPC3-AS1 GPC3
GH0XJ133908 Enhancer 0.5 Ensembl ENCODE 0.4 +11.2 11244 1.3 PAF1 GPC3 GPC3-AS1
GH0XJ133921 Enhancer 0.6 ENCODE 0.3 +24.7 24721 0.5 ZFX RAD21 CTCF ZNF629 ZBTB48 SMC3 ZNF335 ZNF654 ZNF660 ZBTB12 GPC3-AS1 GPC3
GH0XJ133922 Enhancer 0.5 ENCODE 0.3 +25.9 25883 1.1 CTBP1 PKNOX1 GABPA ZFHX2 GPC3-AS1 GPC3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GPC3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GPC3-AS1 Gene

Genomic Locations for GPC3-AS1 Gene
chrX:133,897,443-133,897,934
(GRCh38/hg38)
Size:
492 bases
Orientation:
Plus strand

Genomic View for GPC3-AS1 Gene

Genes around GPC3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GPC3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GPC3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GPC3-AS1 Gene

Proteins for GPC3-AS1 Gene

Post-translational modifications for GPC3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GPC3-AS1 Gene

Domains & Families for GPC3-AS1 Gene

Gene Families for GPC3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with GPC3-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GPC3-AS1 Gene

Function for GPC3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GPC3-AS1 Gene

Localization for GPC3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GPC3-AS1 Gene

Pathways & Interactions for GPC3-AS1 Gene

PathCards logo

SuperPathways for GPC3-AS1 Gene

No Data Available

Interacting Proteins for GPC3-AS1 Gene

Gene Ontology (GO) - Biological Process for GPC3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GPC3-AS1 Gene

Drugs & Compounds for GPC3-AS1 Gene

No Compound Related Data Available

Transcripts for GPC3-AS1 Gene

mRNA/cDNA for GPC3-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for GPC3-AS1 Gene

No ASD Table

Relevant External Links for GPC3-AS1 Gene

GeneLoc Exon Structure for
GPC3-AS1
ECgene alternative splicing isoforms for
GPC3-AS1

Expression for GPC3-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GPC3-AS1 Gene

Orthologs for GPC3-AS1 Gene

Evolution for GPC3-AS1 Gene

ENSEMBL:
Gene Tree for GPC3-AS1 (if available)
TreeFam:
Gene Tree for GPC3-AS1 (if available)

No data available for Orthologs for GPC3-AS1 Gene

Paralogs for GPC3-AS1 Gene

No data available for Paralogs for GPC3-AS1 Gene

Variants for GPC3-AS1 Gene

Sequence variations from dbSNP and Humsavar for GPC3-AS1 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1000170354 -- 133,896,809(+) T/G upstream_transcript_variant
rs1000201528 -- 133,896,243(+) C/A/T upstream_transcript_variant
rs1001191339 -- 133,896,001(+) G/A upstream_transcript_variant
rs1002703093 -- 133,895,614(+) C/T upstream_transcript_variant
rs1004535222 -- 133,897,873(+) T/G non_coding_transcript_variant

Additional Variant Information for GPC3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GPC3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GPC3-AS1 Gene

Disorders for GPC3-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for GPC3-AS1 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
hepatocellular carcinoma
  • hcc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for GPC3-AS1

genes like me logo Genes that share disorders with GPC3-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for GPC3-AS1 Gene

Publications for GPC3-AS1 Gene

  1. Long noncoding RNA glypican 3 (GPC3) antisense transcript 1 promotes hepatocellular carcinoma progression via epigenetically activating GPC3. (PMID: 27573079) Zhu XT … Cheng XY (The FEBS journal 2016) 2 3 58

Products for GPC3-AS1 Gene

Sources for GPC3-AS1 Gene

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