Aliases for GPAT2P2 Gene

Aliases for GPAT2P2 Gene

  • Glycerol-3-Phosphate Acyltransferase 2 Pseudogene 2 2 3 5
  • Glycerol-3-Phosphate Acyltransferase 2, Mitochondrial Pseudogene 3
  • GPAT2P2 5

External Ids for GPAT2P2 Gene

Summaries for GPAT2P2 Gene

GeneCards Summary for GPAT2P2 Gene

GPAT2P2 (Glycerol-3-Phosphate Acyltransferase 2 Pseudogene 2) is a Pseudogene.

Additional gene information for GPAT2P2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for GPAT2P2 Gene

Genomics for GPAT2P2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for GPAT2P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J097082 Enhancer 0.3 Ensembl 600.7 +0.9 933 1.3 CTCF RAD21 GPAT2P2 lnc-ANKRD36-5 ENSG00000230606 ANKRD36B piR-57014-003 FAHD2B FAM178B
GH02J096866 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 4.9 -212.0 -211973 5.8 HNRNPL CREB1 GATAD2A CTCF IKZF1 POLR2A BACH1 LARP7 ZNF143 MTA2 SEMA4C lnc-CNNM3-3 SNRNP200 LMAN2L KANSL3 CNNM3 ANKRD36 CIAO1 STARD7-AS1 FAM178B
GH02J096950 Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas dbSUPER 5.3 -127.9 -127897 6.4 HNRNPL GATAD2A CTCF TEAD4 PRDM10 IKZF1 NFKBIZ ZNF692 TARDBP ZNF143 lnc-SEMA4C-1 lnc-CNNM3-4 ENSG00000230606 FAHD2B SNRNP200 GPAT2P2 RNA5SP101 FAM178B SEMA4C
GH02J096944 Enhancer 0.7 Ensembl dbSUPER 4.5 -136.0 -135997 1.4 IKZF1 ZNF24 SCRT2 ZNF316 NFIC ELF1 ZNF592 NFIB HDGF HDAC1 GPAT2P2 ENSG00000274206 lnc-SEMA4C-1 FAM178B SEMA4C
GH02J096947 Enhancer 0.5 dbSUPER 5.4 -133.2 -133157 1.4 HDAC2 BCOR CTCF ZNF768 ZMYM3 KDM1A ESRRA NFXL1 SMARCA5 FAHD2B GPAT2P2 COX5B lnc-SEMA4C-1 ENSG00000274206 FAM178B SEMA4C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GPAT2P2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for GPAT2P2 Gene

Genomic Locations for GPAT2P2 Gene
chr2:97,081,098-97,083,472
(GRCh38/hg38)
Size:
2,375 bases
Orientation:
Plus strand
chr2:97,746,835-97,749,209
(GRCh37/hg19)
Size:
2,375 bases
Orientation:
Plus strand

Genomic View for GPAT2P2 Gene

Genes around GPAT2P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GPAT2P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GPAT2P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GPAT2P2 Gene

Proteins for GPAT2P2 Gene

Post-translational modifications for GPAT2P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GPAT2P2 Gene

Domains & Families for GPAT2P2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for GPAT2P2 Gene

Function for GPAT2P2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GPAT2P2 Gene

Localization for GPAT2P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GPAT2P2 Gene

Pathways & Interactions for GPAT2P2 Gene

PathCards logo

SuperPathways for GPAT2P2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for GPAT2P2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for GPAT2P2 Gene

Drugs & Compounds for GPAT2P2 Gene

No Compound Related Data Available

Transcripts for GPAT2P2 Gene

mRNA/cDNA for GPAT2P2 Gene

1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for GPAT2P2 Gene

No ASD Table

Relevant External Links for GPAT2P2 Gene

GeneLoc Exon Structure for
GPAT2P2

Expression for GPAT2P2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GPAT2P2 Gene

Orthologs for GPAT2P2 Gene

Evolution for GPAT2P2 Gene

ENSEMBL:
Gene Tree for GPAT2P2 (if available)
TreeFam:
Gene Tree for GPAT2P2 (if available)

No data available for Orthologs for GPAT2P2 Gene

Paralogs for GPAT2P2 Gene

No data available for Paralogs for GPAT2P2 Gene

Variants for GPAT2P2 Gene

Additional Variant Information for GPAT2P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GPAT2P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GPAT2P2 Gene

Disorders for GPAT2P2 Gene

Additional Disease Information for GPAT2P2

No disorders were found for GPAT2P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GPAT2P2 Gene

Publications for GPAT2P2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for GPAT2P2 Gene

Products for GPAT2P2 Gene

Sources for GPAT2P2 Gene